View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5311_high_46 (Length: 274)

Name: NF5311_high_46
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5311_high_46
NF5311_high_46
[»] chr1 (12 HSPs)
chr1 (23-263)||(13102008-13102248)
chr1 (23-263)||(13214496-13214736)
chr1 (25-263)||(13008210-13008448)
chr1 (25-263)||(13069120-13069358)
chr1 (25-250)||(13205481-13205706)
chr1 (37-242)||(30367055-30367260)
chr1 (102-263)||(13162623-13162784)
chr1 (121-263)||(13095520-13095662)
chr1 (48-237)||(13005867-13006056)
chr1 (104-263)||(13130932-13131091)
chr1 (118-242)||(19278109-19278233)
chr1 (117-242)||(13064166-13064291)
[»] chr6 (2 HSPs)
chr6 (25-242)||(31376520-31376740)
chr6 (104-242)||(31385227-31385366)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 263
Target Start/End: Original strand, 13102008 - 13102248
Alignment:
Q  23 tatcttggaagttggacccccttccgtaattgctaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagcccgtgtttgt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13102008 tatcttggaagttggacccccttccgtaattgctaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagccagtgtttgt 13102107  T
Q  123 gaaccaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctggtagc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13102108 gaaccaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctggtagc 13102207  T
Q  223 ataccaattattggccaattaattggtacaaattcatctct 263  Q
    |||||||||||||||||||| ||||||| || |||||||||    
T  13102208 ataccaattattggccaattgattggtaaaatttcatctct 13102248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 263
Target Start/End: Original strand, 13214496 - 13214736
Alignment:
Q  23 tatcttggaagttggacccccttccgtaattgctaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagcccgtgtttgt 122  Q
    |||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  13214496 tatcttggaagttggggccccttccgtaattgccaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagcttgtgtttgt 13214595  T
Q  123 gaaccaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctggtagc 222  Q
    |||||||||||  |||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| ||  ||||||    
T  13214596 gaaccaggctcactcaaatcgaaacattcctccatgatgtttcaaaactaaggttgtataatcatggaaattggacaggggacgcaaaatcgtcggtagc 13214695  T
Q  223 ataccaattattggccaattaattggtacaaattcatctct 263  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  13214696 ataccaattattggccaattgattggtacaatttcatctct 13214736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 25 - 263
Target Start/End: Original strand, 13008210 - 13008448
Alignment:
Q  25 tcttggaagttggacccccttccgtaattgctaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagcccgtgtttgtga 124  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||  ||||||||||    
T  13008210 tctttgaagttggacccccttccgtagttgccaaaattcttgctcgcgatgtgatcaacattcatcggatcactggtaccgataaagcttgtgtttgtga 13008309  T
Q  125 accaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctggtagcat 224  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||| | | ||||||||    
T  13008310 accaagctccttcaaatcgaaatgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtgatgcaaaatcccaggtagcat 13008409  T
Q  225 accaattattggccaattaattggtacaaattcatctct 263  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  13008410 accaattattggccaattaattggtgcaaattcatctct 13008448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 25 - 263
Target Start/End: Complemental strand, 13069358 - 13069120
Alignment:
Q  25 tcttggaagttggacccccttccgtaattgctaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagcccgtgtttgtga 124  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||||||||| | |||||||||||||||||||||||| |||||||  ||||||||||    
T  13069358 tctttgaagttggacccccttccgtagttgccaaaattcttgctcgcaatgtgttcaacattcattggatcactggtaccaataaagcttgtgtttgtga 13069259  T
Q  125 accaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctggtagcat 224  Q
    ||||||||||| |||||| ||||||||||||||||||||| |||| |||||||| | ||||||||||||||||||||| || || ||||||  |||||||    
T  13069258 accaggctcctccaaatctaaacgttcctccatgatgtttcaaaattaaggttgcacgatcatggaaattggacaggttacacataagcgccagtagcat 13069159  T
Q  225 accaattattggccaattaattggtacaaattcatctct 263  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  13069158 accaaatattggccaattaattggtacaaattcatctct 13069120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 13205481 - 13205706
Alignment:
Q  25 tcttggaagttggacccccttccgtaattgctaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagcccgtgtttgtga 124  Q
    |||| ||||||||||||||||||||| |||| |||||||||||  |||||||| | |||||||| ||||||||| ||| |||||||||  ||||||||||    
T  13205481 tctttgaagttggacccccttccgtagttgccaaaattcttgcctgcaatgtggtcaacattcaatggatcacttgtaacgataaagcttgtgtttgtga 13205580  T
Q  125 accaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctggtagcat 224  Q
    |||||||||||||||||||||| |||||||||| | |||| |||| |||||||  || ||||||||| ||| | | ||||||||||||||  ||||||||    
T  13205581 accaggctccttcaaatcgaaatgttcctccattacgtttcaaaattaaggttagataatcatggaatttgaataagtgacgcaaaagcgacggtagcat 13205680  T
Q  225 accaattattggccaattaattggta 250  Q
    ||||||||||||| ||||||||||||    
T  13205681 accaattattggcaaattaattggta 13205706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 242
Target Start/End: Complemental strand, 30367260 - 30367055
Alignment:
Q  37 gacccccttccgtaattgctaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagcccgtgtttgtgaaccaggctcctt 136  Q
    |||||||| ||||| |||| |||||||||||| || ||||| ||||| ||||||||||||   ||| |||||||||  ||||||||||| |||| |||||    
T  30367260 gaccccctcccgtagttgccaaaattcttgcttgcgatgtggttaacgttcattggatcagcagtagcgataaagcttgtgtttgtgaatcagggtcctt 30367161  T
Q  137 caaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctggtagcataccaattattgg 236  Q
    |||||||||||||||||||||||  ||| |||||||||||   ||| |||| |||||| ||||| |||||||| | ||    ||||||||||| ||||||    
T  30367160 caaatcgaaacgttcctccatgacatttcaaaactaaggtgaaatggtcattgaaatttgacagatgacgcaacaccgacaatagcataccaactattgg 30367061  T
Q  237 ccaatt 242  Q
    ||||||    
T  30367060 ccaatt 30367055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 102 - 263
Target Start/End: Original strand, 13162623 - 13162784
Alignment:
Q  102 accgataaagcccgtgtttgtgaaccaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacagg 201  Q
    ||||| |||||  |||||||||||||||| ||||| ||||||| | |||||||||| | | || ||||| | ||||| || ||||||||||| ||| ||     
T  13162623 accgacaaagcttgtgtttgtgaaccagggtccttgaaatcgataagttcctccattacgcttcaaaacaatggttgcataatcatggaaatcggagaga 13162722  T
Q  202 tgacgcaaaagcgctggtagcataccaattattggccaattaattggtacaaattcatctct 263  Q
    ||| ||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13162723 tgatgcaaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctct 13162784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 121 - 263
Target Start/End: Original strand, 13095520 - 13095662
Alignment:
Q  121 gtgaaccaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctggta 220  Q
    ||||||||||  |||| || | |||| |||||||||||  | || ||||| | ||||| || ||||||||||| ||| || ||| ||||||  || ||||    
T  13095520 gtgaaccagggccctttaattagaaaagttcctccatggcgcttcaaaacaatggttgcataatcatggaaatcggagagatgatgcaaaaatgccggta 13095619  T
Q  221 gcataccaattattggccaattaattggtacaaattcatctct 263  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13095620 gcataccaattattggccaattaattggtacaaattcatctct 13095662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 237
Target Start/End: Original strand, 13005867 - 13006056
Alignment:
Q  48 gtaattgctaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagcccgtgtttgtgaaccaggctccttcaaatcgaaac 147  Q
    |||||| | |||||||||||| |  ||||| | ||| |||||||||||| ||||  |||||||||  || |||||| | ||||  ||||| ||||||||     
T  13005867 gtaattaccaaaattcttgcttgtgatgtggtcaacgttcattggatcagtggtcgcgataaagcttgtatttgtgtatcagggcccttcgaatcgaaaa 13005966  T
Q  148 gttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctggtagcataccaattattggc 237  Q
    |||||||||||||| |||||||| ||||||| || |||||| |||||||| || |||| ||||| |   |||||||||||| ||| ||||    
T  13005967 gttcctccatgatgctttaaaacaaaggttgcataatcatgtaaattggatagatgactcaaaaacctcggtagcataccatttactggc 13006056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 263
Target Start/End: Original strand, 13130932 - 13131091
Alignment:
Q  104 cgataaagcccgtgtttgtgaaccaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtg 203  Q
    |||||||||  ||||||||||||||||  |||| ||||||| | |||||||||| | | || ||||| | ||||| || ||||||| ||| ||| || ||    
T  13130932 cgataaagcttgtgtttgtgaaccagggcccttgaaatcgacaagttcctccataacgcttcaaaacaatggttgaataatcatggtaatcggagagatg 13131031  T
Q  204 acgcaaaagcgctggtagcataccaattattggccaattaattggtacaaattcatctct 263  Q
    || |||||  |  ||||| |||||||||||||||||||||||| ||| || |||||||||    
T  13131032 acacaaaaatgacggtagtataccaattattggccaattaattagtaaaagttcatctct 13131091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 19278233 - 19278109
Alignment:
Q  118 tttgtgaaccaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctg 217  Q
    ||||||||||| | ||||| |||  |||| || |||||||||||||| ||||||||||||| || |||||| |  ||||| |||| | ||||||  | ||    
T  19278233 tttgtgaaccaaggtcctttaaactgaaaagtacctccatgatgtttcaaaactaaggttgcataatcatgaatcttggataggttatgcaaaactgatg 19278134  T
Q  218 gtagcataccaattattggccaatt 242  Q
    ||||||| |||||||||||||||||    
T  19278133 gtagcatgccaattattggccaatt 19278109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 242
Target Start/End: Complemental strand, 13064291 - 13064166
Alignment:
Q  117 gtttgtgaaccaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgct 216  Q
    |||||||||||||| ||||||||| | ||| || || ||||||||||| |||||||||||| ||| ||||| | ||||||| |  | | ||| |  || |    
T  13064291 gtttgtgaaccaggatccttcaaacctaaaagtgccaccatgatgtttcaaaactaaggttatataatcatagtaattggaaatattatgcagagtcgat 13064192  T
Q  217 ggtagcataccaattattggccaatt 242  Q
    |||||||| |||| ||||||||||||    
T  13064191 ggtagcattccaagtattggccaatt 13064166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 31376520 - 31376740
Alignment:
Q  25 tcttggaagttg---gacccccttccgtaattgctaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagcccgtgtttg 121  Q
    ||||||||||||   |||||||| ||||| |||| |||||||||||| || ||||| ||||| || |||||||||   ||  |||||||||  |||||||    
T  31376520 tcttggaagttgatagaccccctcccgtagttgccaaaattcttgcttgcgatgtggttaacgttaattggatcagcagtggcgataaagcttgtgtttg 31376619  T
Q  122 tgaaccaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctggtag 221  Q
    ||||||||| |||||||||||||||| ||||| |||||  ||| |||||||||||   ||| | || |||||| ||||| |||||||| | ||   ||||    
T  31376620 tgaaccagggtccttcaaatcgaaacattccttcatgacctttcaaaactaaggtgacatggttattgaaatttgacagatgacgcaacaccgacagtag 31376719  T
Q  222 cataccaattattggccaatt 242  Q
    |||||||| ||||||||||||    
T  31376720 cataccaactattggccaatt 31376740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 31385366 - 31385227
Alignment:
Q  104 cgataaagcccgtgtttgtgaaccaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcat-ggaaattggacaggt 202  Q
    |||||||||  |||||||||||||||| | |||| ||| ||||||||||||||||| ||||  ||||||| ||   |||||||| | ||||||| ||| |    
T  31385366 cgataaagcttgtgtttgtgaaccaggatacttcgaattgaaacgttcctccatgacgtttcgaaactaaagtgaaatgatcatcgaaaattgggcagat 31385267  T
Q  203 gacgcaaaagcgctggtagcataccaattattggccaatt 242  Q
     | |||||| || | |||||| |  |||||||||||||||    
T  31385266 aatgcaaaaccgatagtagcaaataaattattggccaatt 31385227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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