View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5311_high_54 (Length: 251)
Name: NF5311_high_54
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_high_54 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0280 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 37800555 - 37800795
Alignment:
| Q |
11 |
cacagattgtgcatatttaggtaatgccatgtttgggattgcaaggaacgcgtcattatccctataagagggatttgatctctcacattgcaaacttgtt |
110 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
37800555 |
cacagattgtgcatatttaggtgatgcaatgtttgggattgcaaggaacgcgtcattatccctataagagggattggatccctcacattgcaaacttgtt |
37800654 |
T |
|
| Q |
111 |
ttcctaacacacccacctgacttatcccccagattccattcagacaccgattttggctcaaaacctctcaaacaactacaataaggctttgagttttcat |
210 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| | || |||| || |
|
|
| T |
37800655 |
ttcctaacacatccacctgagttatcccccagattccattcagacactgactttggctcgaaacctctcaaacaactacaataaggcatggaattttgat |
37800754 |
T |
|
| Q |
211 |
tgcagctcccaaatgcaccgcagaaagcataaacctcacat |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37800755 |
aacagctcccaaatgcaccgcagaaagcataaacatcacat |
37800795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 37765188 - 37764958
Alignment:
| Q |
20 |
tgcatatttaggtaatgccatgtttgggattgcaaggaacgcgtcattatccctataagagggatttgatctctcacattgcaaacttgttttcctaaca |
119 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||| ||||| ||| || ||| || |||| || || ||||| ||||| || |||||||| || | | |
|
|
| T |
37765188 |
tgcatgtttaggcaatgccatgttggggattgcacggaacctgtcctttaccccattagagtgaccagaactctcgcattgtaaccttgtttttctcaga |
37765089 |
T |
|
| Q |
120 |
cacccacctgacttatcccccagattccattcagacaccgattttggctcaaaacctctcaaacaactacaataaggctttgagttttcattgcagctcc |
219 |
Q |
| |
|
||||| ||||| | |||| ||| || ||| |||||| || ||||||||| |||| ||||||||| ||||||| ||||||||||||||| | ||||||| |
|
|
| T |
37765088 |
cacccgcctgagtgatcctccaaatcccagtcagactgtgactttggctcataaccactcaaacaattacaatacggctttgagttttcagtacagctcc |
37764989 |
T |
|
| Q |
220 |
caaatgcaccgcagaaagcataaacctcaca |
250 |
Q |
| |
|
|||| | |||||| ||||||||| ||||||| |
|
|
| T |
37764988 |
caaacgaaccgcataaagcataagcctcaca |
37764958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 6433426 - 6433515
Alignment:
| Q |
162 |
tttggctcaaaacctctcaaacaactacaataaggctttgagttttcattgcagctcccaaatgcaccgcagaaagcataaacctcacat |
251 |
Q |
| |
|
||||||||| |||| || |||||| ||||||| ||||| ||||| ||| ||||||||||||| | |||||| |||||||||| ||||||| |
|
|
| T |
6433426 |
tttggctcacaaccactgaaacaattacaatatggcttcgagttctcagtgcagctcccaaacgaaccgcacaaagcataaatctcacat |
6433515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 15207 - 15152
Alignment:
| Q |
195 |
ggctttgagttttcattgcagctcccaaatgcaccgcagaaagcataaacctcaca |
250 |
Q |
| |
|
||||||||||| | ||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
15207 |
ggctttgagttctgattacagctaccaaatgcaccacagaaagcataaacctcaca |
15152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University