View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5311_high_55 (Length: 250)

Name: NF5311_high_55
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5311_high_55
NF5311_high_55
[»] chr7 (5 HSPs)
chr7 (1-244)||(41170335-41170578)
chr7 (154-217)||(18793691-18793754)
chr7 (154-217)||(38566666-38566729)
chr7 (159-217)||(28249007-28249065)
chr7 (156-220)||(42766594-42766658)
[»] chr2 (4 HSPs)
chr2 (153-216)||(12677789-12677852)
chr2 (159-214)||(5712549-5712604)
chr2 (159-220)||(32700658-32700719)
chr2 (170-219)||(36758172-36758221)
[»] chr5 (6 HSPs)
chr5 (157-217)||(4385959-4386019)
chr5 (154-217)||(15577878-15577942)
chr5 (153-219)||(36439961-36440027)
chr5 (154-220)||(42108563-42108629)
chr5 (154-217)||(817841-817903)
chr5 (159-215)||(22859673-22859729)
[»] chr4 (2 HSPs)
chr4 (153-217)||(32526429-32526493)
chr4 (154-220)||(11432451-11432517)
[»] chr1 (5 HSPs)
chr1 (156-219)||(6213098-6213161)
chr1 (156-218)||(9230794-9230857)
chr1 (157-216)||(42323459-42323518)
chr1 (156-214)||(35879675-35879733)
chr1 (159-220)||(22863292-22863353)
[»] chr6 (1 HSPs)
chr6 (162-219)||(33614576-33614633)
[»] chr3 (2 HSPs)
chr3 (154-217)||(31133027-31133090)
chr3 (153-218)||(33458621-33458686)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 41170335 - 41170578
Alignment:
Q  1 acaaagcataaactgacttaccacttaccacactgatcgagaagtcgatgttaggtctgatgtgtaccaaataaactagttttgtattagggtctccaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41170335 acaaagcataaactgacttaccacttaccacactgatcgagaagtcgatgttaggtctgatgtgtaccaaataaactagttttgtattagggtctccaaa 41170434  T
Q  101 gttatcggcaagaaaactagaaatgaaatatgatgtaatatataatcaaaatatcaaattctctaaaaattcatgttatatatcaagaaagagtttaatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  41170435 gttatcggcaagaaaactagaaatgaaatatgatgtaatatataatcaaaatatcaaattctctaaaaattcatgttaaatatcaaaaaagagtttaatc 41170534  T
Q  201 tcgttgatctattagttcgcatattcccacacctagtataatct 244  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  41170535 tcgttgatctattagttcgcatattcccacacctagtttaatct 41170578  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 18793754 - 18793691
Alignment:
Q  154 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 217  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||||| | ||||||||||||||    
T  18793754 tcaaattctctaaaaattcatgttaaatatcaaaagagagtttaatcgcattgatctattagtt 18793691  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 38566729 - 38566666
Alignment:
Q  154 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 217  Q
    |||| ||||| ||||||||||||||  |||||| | ||||||||||||| ||||||||||||||    
T  38566729 tcaagttctccaaaaattcatgttaagtatcaaaagagagtttaatctcattgatctattagtt 38566666  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 28249007 - 28249065
Alignment:
Q  159 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 217  Q
    |||| |||||| |||||||| ||||||| ||||||||||||||  ||||||||||||||    
T  28249007 ttctttaaaaactcatgttaaatatcaaaaaagagtttaatctaattgatctattagtt 28249065  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 42766594 - 42766658
Alignment:
Q  156 aaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 220  Q
    ||||||| ||||||||||||||| |||||||   |||| |||||||| ||||| || ||||||||    
T  42766594 aaattctttaaaaattcatgttaaatatcaaaggagagattaatctcattgatataatagttcgc 42766658  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 12677789 - 12677852
Alignment:
Q  153 atcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagt 216  Q
    |||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||    
T  12677789 atcaaattctttaaaaattcatgttaaatatcaaaaaaaagtttaatctcgttgatatattagt 12677852  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 5712549 - 5712604
Alignment:
Q  159 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctatta 214  Q
    |||||||||| ||||||||| ||||||| | |||||||||| || |||||||||||    
T  5712549 ttctctaaaacttcatgttaaatatcaaaagagagtttaatatcattgatctatta 5712604  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 32700719 - 32700658
Alignment:
Q  159 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 220  Q
    |||||||||| ||||||||| ||||| | | |||||||||| || ||||| |||||||||||    
T  32700719 ttctctaaaacttcatgttaaatatcgaaagagagtttaatatcattgatttattagttcgc 32700658  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 36758221 - 36758172
Alignment:
Q  170 ttcatgttatatatcaagaaagagtttaatctcgttgatctattagttcg 219  Q
    ||||||||| ||||||| | |||||||||| || ||||||||||||||||    
T  36758221 ttcatgttaaatatcaaaagagagtttaatatcattgatctattagttcg 36758172  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 4385959 - 4386019
Alignment:
Q  157 aattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 217  Q
    ||||||||||| | |||||||| |||||||||||||||||||| || ||||||||||||||    
T  4385959 aattctctaaataatcatgttaaatatcaagaaagagtttaatatcattgatctattagtt 4386019  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 15577942 - 15577878
Alignment:
Q  154 tcaaattctctaaaaattcatgttatatatcaagaaa-gagtttaatctcgttgatctattagtt 217  Q
    ||||||||||||||||||||||||| |||| || ||| ||||||||||| |||||  ||||||||    
T  15577942 tcaaattctctaaaaattcatgttaaatataaaaaaaggagtttaatcttgttgagttattagtt 15577878  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 36440027 - 36439961
Alignment:
Q  153 atcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcg 219  Q
    ||||||||||||||||| |||||||   |||||| | ||||||||||||  ||||| ||||||||||    
T  36440027 atcaaattctctaaaaagtcatgttgattatcaaaagagagtttaatctatttgatatattagttcg 36439961  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 42108629 - 42108563
Alignment:
Q  154 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 220  Q
    |||||||| |||||||||||||||   |||||| | ||||||||||||  ||||| |||||||||||    
T  42108629 tcaaattccctaaaaattcatgttgattatcaaaagagagtttaatctaattgatatattagttcgc 42108563  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 817841 - 817903
Alignment:
Q  154 tcaaattctctaaaaat-tcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 217  Q
    ||||||||||||||||  |||||||| |||||||||  |||||||||||| |||||| |||||||    
T  817841 tcaaattctctaaaaaaatcatgttaaatatcaaga--gagtttaatctcattgatccattagtt 817903  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 22859673 - 22859729
Alignment:
Q  159 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattag 215  Q
    |||||||||| ||||| ||| ||||||| | |||||||||| || ||||||||||||    
T  22859673 ttctctaaaacttcatattaaatatcaaaagagagtttaatatcattgatctattag 22859729  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 32526493 - 32526429
Alignment:
Q  153 atcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 217  Q
    |||||||||||||||||||||||||| ||||||| |  |||||||||||  ||||| ||||||||    
T  32526493 atcaaattctctaaaaattcatgttaaatatcaaaagcgagtttaatcttattgatttattagtt 32526429  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 11432451 - 11432517
Alignment:
Q  154 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 220  Q
    ||||||||||||||||||||||||   |||||| | |||||||||| |  ||||| |||||||||||    
T  11432451 tcaaattctctaaaaattcatgttgattatcaaaagagagtttaatttaattgatatattagttcgc 11432517  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 6213098 - 6213161
Alignment:
Q  156 aaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcg 219  Q
    ||||||||||||||||||||||| |||| || || ||||||| |||  ||||||||||||||||    
T  6213098 aaattctctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcg 6213161  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 9230857 - 9230794
Alignment:
Q  156 aaattctctaaaaattcatgttata-tatcaagaaagagtttaatctcgttgatctattagttc 218  Q
    ||||||||||||||||||||||| | |||||| | || |||||||||| || ||||||||||||    
T  9230857 aaattctctaaaaattcatgttaaattatcaaaagagggtttaatctcattaatctattagttc 9230794  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 42323518 - 42323459
Alignment:
Q  157 aattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagt 216  Q
    ||||||||| ||| |||||||| ||||||| | ||| ||||||||| |||||||||||||    
T  42323518 aattctctataaaatcatgttaaatatcaaaagagaatttaatctcattgatctattagt 42323459  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 35879733 - 35879675
Alignment:
Q  156 aaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctatta 214  Q
    |||||||||||||  |||||||| ||||||| || |||||||||||| ||| |||||||    
T  35879733 aaattctctaaaatgtcatgttaaatatcaaaaaggagtttaatctcattgctctatta 35879675  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 22863353 - 22863292
Alignment:
Q  159 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 220  Q
    |||||||||| |||| |||| ||||| | | |||||||||| || |||||||||||||||||    
T  22863353 ttctctaaaacttcaggttaaatatcgaaagagagtttaatatcattgatctattagttcgc 22863292  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 33614633 - 33614576
Alignment:
Q  162 tctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcg 219  Q
    ||||||||||||||||| ||||||| | |||||| |||||| ||||| ||||||||||    
T  33614633 tctaaaaattcatgttaaatatcaaaagagagttcaatctcattgatatattagttcg 33614576  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 31133090 - 31133027
Alignment:
Q  154 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 217  Q
    |||| |||| ||||||||||||||| |||  || | ||||||||||||| ||||||||||||||    
T  31133090 tcaagttctataaaaattcatgttaaatacaaaaagagagtttaatctcattgatctattagtt 31133027  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 33458621 - 33458686
Alignment:
Q  153 atcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttc 218  Q
    ||||| ||||||| |||||||||||| ||| ||| | | |||||||| |||||||| |||||||||    
T  33458621 atcaagttctctataaattcatgttaaataccaaaagaaagtttaatttcgttgatatattagttc 33458686  T

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