View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_high_6 (Length: 516)
Name: NF5311_high_6
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 13 - 368
Target Start/End: Original strand, 6946664 - 6947004
Alignment:
| Q |
13 |
aaaatgtcatcaattcaatcaaaatctaaccacgcgatatactcttt-agatttgacgtgcctccgtat--cagatacatatcttatcgacacgaacaca |
109 |
Q |
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| T |
6946664 |
aaaatgtcatcaattcaatcaaaatctaaccacgcgatatattcttttagatttgatgtgtctctgtgtgtcagatacatatcttatcgacacgga-aca |
6946762 |
T |
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| Q |
110 |
taggattacgttaaattatactttctcaatttattcttgaagtcgacatatcgatattctattcggtatccatgtcggagtctatgtttcgtaacaactg |
209 |
Q |
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| T |
6946763 |
taggattacattaaattatattttctcaa-----------------catatcaatatgctatccggtatctatgtctgagtctatgtttcgtaacaactg |
6946845 |
T |
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| Q |
210 |
atcgattcttgaaccgatcgattcggtccgattttcaaaacatctaaacggagcagatcaagactctgctatgctcacagaaattctaccttttgtgttg |
309 |
Q |
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| T |
6946846 |
attgattcttgaaccgatcgattcggtccgattttcaaaacatctaaacgaagtagatcaagactctgctatgctcacagaaattctaccttttgtgttg |
6946945 |
T |
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| Q |
310 |
tgccaaacatagcacataacttcacgccgctacattcccatttttcaccttttcttttc |
368 |
Q |
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| T |
6946946 |
tgccaaacatagcacataacttcacgccgctacattcccattttccaccttttcttttc |
6947004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 429 - 506
Target Start/End: Original strand, 6947067 - 6947144
Alignment:
| Q |
429 |
actatatatatacacgagtgtacaacaataacactatcacaagaaatcacacatagaatagacacataggggaccaag |
506 |
Q |
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| T |
6947067 |
actatatatatacacaagtgtacaacaataacactatcacaagaaatcacacatagaatagacacataggggaccaag |
6947144 |
T |
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