View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5311_high_61 (Length: 239)

Name: NF5311_high_61
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5311_high_61
NF5311_high_61
[»] chr7 (8 HSPs)
chr7 (1-222)||(40230930-40231151)
chr7 (1-117)||(33540035-33540151)
chr7 (1-122)||(38190203-38190323)
chr7 (1-129)||(19468253-19468381)
chr7 (1-129)||(22317608-22317738)
chr7 (1-101)||(44767282-44767378)
chr7 (9-129)||(39608189-39608311)
chr7 (1-103)||(27224235-27224338)
[»] chr2 (6 HSPs)
chr2 (1-129)||(2104127-2104253)
chr2 (1-123)||(5868914-5869037)
chr2 (1-58)||(26290461-26290518)
chr2 (1-58)||(30707079-30707136)
chr2 (1-128)||(18242074-18242202)
chr2 (1-111)||(44259770-44259880)
[»] chr5 (3 HSPs)
chr5 (1-111)||(27246260-27246369)
chr5 (1-127)||(11245427-11245553)
chr5 (1-58)||(22868079-22868136)
[»] chr6 (10 HSPs)
chr6 (1-129)||(1112422-1112551)
chr6 (1-94)||(609581-609674)
chr6 (1-123)||(26497786-26497910)
chr6 (1-111)||(7201148-7201257)
chr6 (7-129)||(3361954-3362077)
chr6 (9-127)||(1522655-1522774)
chr6 (1-129)||(10670007-10670135)
chr6 (1-126)||(28847698-28847823)
chr6 (1-58)||(17364280-17364337)
chr6 (1-57)||(29288418-29288474)
[»] chr4 (7 HSPs)
chr4 (1-134)||(6086973-6087104)
chr4 (1-121)||(6166418-6166537)
chr4 (1-129)||(18886210-18886338)
chr4 (1-129)||(16061380-16061508)
chr4 (1-58)||(6131994-6132051)
chr4 (1-78)||(38138802-38138879)
chr4 (1-58)||(32727973-32728030)
[»] chr8 (7 HSPs)
chr8 (1-111)||(13751387-13751498)
chr8 (1-111)||(44004266-44004374)
chr8 (1-58)||(9946757-9946814)
chr8 (1-121)||(21466818-21466943)
chr8 (1-58)||(24534938-24534995)
chr8 (1-102)||(6976519-6976620)
chr8 (3-58)||(33474651-33474706)
[»] chr1 (8 HSPs)
chr1 (1-104)||(50509829-50509931)
chr1 (1-58)||(26687692-26687749)
chr1 (1-58)||(24892009-24892066)
chr1 (1-129)||(7380303-7380430)
chr1 (1-58)||(9672535-9672592)
chr1 (2-58)||(23688381-23688437)
chr1 (4-127)||(50262528-50262648)
chr1 (1-58)||(5882527-5882584)
[»] chr3 (2 HSPs)
chr3 (1-117)||(42624799-42624913)
chr3 (1-111)||(54561144-54561252)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-58)||(284269-284326)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40230930 - 40231151
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||    
T  40230930 taataatcattatacgagtgttattctcaatttaaatagaagattaatcttttaaaaatattgtgaatgttttttattaagtgcttatttttactatgag 40231029  T
Q  101 agccaagcctctaatttcataggaacggctctataatgaagacaatataattaagctatctcccctgtatggcaatgaattatcaccctcggattctttt 200  Q
    || | |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40231030 agtcgagcctctagtttcataggaacggctctatgatgaagacaatataattaagctatctcccctatatggcaatgaattatcaccctcggattctttt 40231129  T
Q  201 aagcttaaactatgacacctag 222  Q
    ||||||||||||||||||||||    
T  40231130 aagcttaaactatgacacctag 40231151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 33540151 - 33540035
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatact-gtgagtgttttttattaagtacttatttttactatga 99  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| | | ||| || |||||||||| |  ||||||||||||||||    
T  33540151 taatcatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaaaattgtgcgt-ttttttattaggggcttatttttactatga 33540053  T
Q  100 gagccaagcctctaattt 117  Q
    ||||| |||||| |||||    
T  33540052 gagccgagcctccaattt 33540035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 38190323 - 38190203
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| | |||| || ||||||||||    | |||||||||| ||||    
T  38190323 taataatcattatacgagtgttattttcaatttaaatagaatattaatcttttaaaaaaattgtgtgt-ttttttattagaggcctatttttactctgag 38190225  T
Q  101 agccaagcctctaatttcatag 122  Q
    || |||||||| ||||||||||    
T  38190224 agtcaagcctccaatttcatag 38190203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 19468381 - 19468253
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    ||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||||| | ||||  | ||| |||||||   |||||||||||||||||    
T  19468381 taataatcattatacgaatgttattttcaatttaaataaaagattaatcttttaaaaaaattgtgcatttttattattaaaggcttatttttactatgag 19468282  T
Q  101 agccaagcctctaatttcataggaacggc 129  Q
    || | ||||||  |||| ||||| |||||    
T  19468281 agtcgagcctccgattttatagggacggc 19468253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 22317738 - 22317608
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatac--tgtgagtgttttttattaagtacttatttttactatg 98  Q
    ||||||| |||||||||||| |||| |||||||||||||||||| ||||||||||||| |   |||  || |||||||||| |  | |||||||||||||    
T  22317738 taataataattatacgagtagtattttcaatttaaatagaagatgaatcttttaaaaaaaaattgtacgttttttttattaggggcctatttttactatg 22317639  T
Q  99 agagccaagcctctaatttcataggaacggc 129  Q
    |||  |||||||| | ||||||||| |||||    
T  22317638 agaatcaagcctccagtttcatagggacggc 22317608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 44767378 - 44767282
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| | |||| |    |||||||||| || | |||||||||||||    
T  44767378 taataatcattatacgagtgttattttcaatttaaatagaagattaatcttataaaaaaattgtgcg----ttttattaaggacctgtttttactatgag 44767283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 39608189 - 39608311
Alignment:
Q  9 attatacgagtattattctcaatttaaatagaagattaatctttt--aaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaa 106  Q
    ||||||| ||| ||||| |||||||||||||||||||||||| ||  ||||| | |||| || |||||||||| |  | ||||||||||| ||||||| |    
T  39608189 attataccagtgttattttcaatttaaatagaagattaatctcttaaaaaaaaattgtgcgttttttttattaggagcctatttttactacgagagccga 39608288  T
Q  107 gcctctaatttcataggaacggc 129  Q
    ||||| | ||| ||||| |||||    
T  39608289 gcctccagttttatagggacggc 39608311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 27224338 - 27224235
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgag---tgttttttattaagtacttatttttactat 97  Q
    ||||||||||||||||||| ||||| ||  ||||||||||||||||||||| |||||| | |||| |   | ||||||||||   || ||||||||||||    
T  27224338 taataatcattatacgagtgttattttc--tttaaatagaagattaatcttataaaaaaattgtgcgtttttttttttattagagacctatttttactat 27224241  T
Q  98 gagagc 103  Q
    ||||||    
T  27224240 gagagc 27224235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2104127 - 2104253
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    |||||||||||| || ||| ||||| |||||||||||||||||||||||||||||||| | | || || ||||||||||||  ||||||||||| |||||    
T  2104127 taataatcattagactagtgttattttcaatttaaatagaagattaatcttttaaaaaaattatg-gt-ttttttattaagggcttatttttaccatgag 2104224  T
Q  101 agccaagcctctaatttcataggaacggc 129  Q
    |||| |||||||| ||||||||| |||||    
T  2104225 agccgagcctctagtttcatagggacggc 2104253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 5869037 - 5868914
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgag-tgttttttattaagtacttatttttactatga 99  Q
    |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||| | | |||||||| | |  | ||||||||||| ||    
T  5869037 taataaccattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaaattgtgcgtttttttttatcaggggcctatttttactacga 5868938  T
Q  100 gagccaagcctctaatttcatagg 123  Q
    ||||| |||||||| ||| |||||    
T  5868937 gagccgagcctctagttttatagg 5868914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 26290461 - 26290518
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    |||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  26290461 taataaccattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaa 26290518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30707079 - 30707136
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    ||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||    
T  30707079 taataatcattatacgagtgttattttcaatttaaatagaaaattaatcttttaaaaa 30707136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 18242202 - 18242074
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatact-gtgagtgttttttattaagtacttatttttactatga 99  Q
    |||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||| | | ||   | ||||||||||   || ||||||||||| ||    
T  18242202 taataaccattatacgagtgttattttcgatttaaatagaagattaatcttttaaaaaaaattgtatattttttttattagagacctatttttactacga 18242103  T
Q  100 gagccaagcctctaatttcataggaacgg 128  Q
    |||||||||||| | ||| ||||| ||||    
T  18242102 gagccaagcctccagttttatagggacgg 18242074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 44259880 - 44259770
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    ||||||| ||||||||||| | ||| ||||||||| ||||||||||||||||| |||| | ||||  |  ||||||  | | || |||||||||| ||||    
T  44259880 taataataattatacgagtgtaattttcaatttaactagaagattaatctttttaaaaaattgtgcattctttttaccatgaacctatttttactctgag 44259781  T
Q  101 agccaagcctc 111  Q
    |||| ||||||    
T  44259780 agccgagcctc 44259770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 27246260 - 27246369
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| | |||| || |||||||||||||  ||||||||||||| ||    
T  27246260 taataatcattatacgagtgttattttcaatttaaatagaaaattaatcttttaaaaa-attgtgcgttttttttattaagtgtttatttttactattag 27246358  T
Q  101 agccaagcctc 111  Q
    || | ||||||    
T  27246359 agtcgagcctc 27246369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 11245427 - 11245553
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| | |||| || ||||||| ||    |  ||||||||||||||    
T  11245427 taataatcattatacgagtgttattttcaatttaaatagaagattaatcttttgaaaaaattgtgtgttttttttactagaggccaatttttactatgag 11245526  T
Q  101 agccaagcctctaatttcataggaacg 127  Q
    |||  | |||| |||||||||||||||    
T  11245527 agctgaacctccaatttcataggaacg 11245553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22868079 - 22868136
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||    
T  22868079 taataatcattatacgagtgtttttttcaatttaaatggaagattaatcttttaaaaa 22868136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 1112551 - 1112422
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtg-agtgttttttattaagtacttatttttactatga 99  Q
    |||||| |||||||||| | ||||| |||||||||||||||||||||||||||||||| | |||| | | |||||||||||  || ||||||||||| ||    
T  1112551 taataaccattatacgaatgttattttcaatttaaatagaagattaatcttttaaaaaaattgtgtatttttttttattaaagacctatttttactacga 1112452  T
Q  100 gagccaagcctctaatttcataggaacggc 129  Q
    ||| | |||||| | ||| |||||||||||    
T  1112451 gagtcgagcctccagttttataggaacggc 1112422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 609674 - 609581
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttac 94  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||||| | |||| || ||||||||||||  | |||||||||    
T  609674 taataatcattatacgagtgttattttcaatataaatagaagattaaccttttaaaaaaattgtgcgttttttttattaagggcctatttttac 609581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 26497910 - 26497786
Alignment:
Q  1 taataatcattatacgagtattattct-caatttaaatagaagattaatcttttaaaaatactgtgag-tgttttttattaagtacttatttttactatg 98  Q
    |||||||||||||||| || ||||| | ||||||||||||||||||||||||||||||| | |||  | | |||||||||| |    |||||||||||||    
T  26497910 taataatcattatacgtgtgttatttttcaatttaaatagaagattaatcttttaaaaaaattgtacgcttttttttattaggggtctatttttactatg 26497811  T
Q  99 agagccaagcctctaatttcatagg 123  Q
    |||||| |||||||| |||||||||    
T  26497810 agagccgagcctctagtttcatagg 26497786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 7201148 - 7201257
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    ||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| | |||| || || |||||||   || |||||||| ||||||    
T  7201148 taataatcattatacaagtgttattttcaatttaaatagaagattaatcttttaaaaa-attgtgcgttttatttattatagacgtatttttattatgag 7201246  T
Q  101 agccaagcctc 111  Q
    || | ||||||    
T  7201247 agtcgagcctc 7201257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 3361954 - 3362077
Alignment:
Q  7 tcattatacgagtattattctcaatttaaatagaagattaatctttt-aaaaatactgtgagtgttttttattaagtacttatttttactatgagagcca 105  Q
    ||||||||| ||| ||||| | |||||||||||||||||| |||||| ||||| | |||| || |||||||||| | ||||| ||||||||||||||||     
T  3361954 tcattatacaagtgttatttttaatttaaatagaagattagtcttttaaaaaaaattgtgcgttttttttattatggacttagttttactatgagagcct 3362053  T
Q  106 agcctctaatttcataggaacggc 129  Q
    | ||||   ||||||||| |||||    
T  3362054 aacctccggtttcatagggacggc 3362077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 1522655 - 1522774
Alignment:
Q  9 attatacgagtattattctcaatttaaatagaagattaatct-tttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaag 107  Q
    ||||||||||| ||||| |||||||||||||||||||||||| || ||||| | |||| |  ||||||||||   || ||||||| ||||||||||  ||    
T  1522655 attatacgagtgttattttcaatttaaatagaagattaatctcttaaaaaaaattgtgcgctttttttattagaaacctatttttcctatgagagctgag 1522754  T
Q  108 cctctaatttcataggaacg 127  Q
    |||| ||||| ||| |||||    
T  1522755 cctccaattttataagaacg 1522774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 10670007 - 10670135
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatc---ttttaaaaatactgtgagtgttttttattaagtacttatttttactat 97  Q
    ||||||||||||||||  | ||||| | |||||||||||||||||| ||   ||||||||||  |||   | ||||||||||||  | ||||||||||||    
T  10670007 taataatcattatacggatgttatttttaatttaaatagaagattattctttttttaaaaattgtgt---ttttttttattaagggcctatttttactat 10670103  T
Q  98 gagagccaagcctctaatttcataggaacggc 129  Q
    ||||| | |||||| | ||||||||| |||||    
T  10670104 gagagtcgagcctccagtttcatagggacggc 10670135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 28847823 - 28847698
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgag-tgttttttattaagtacttatttttactatga 99  Q
    |||||||||||||||  || ||||| | |||||||||||| ||||||||||||||||| | | || | | |||||||||| |  | ||||||||||||||    
T  28847823 taataatcattatacatgtgttatttttaatttaaatagaggattaatcttttaaaaa-attatgcgtttttttttattaggagcctatttttactatga 28847725  T
Q  100 gagccaagcctctaatttcataggaac 126  Q
    ||| | |||||  |||||| |||||||    
T  28847724 gagtcgagccttcaatttcgtaggaac 28847698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17364280 - 17364337
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    ||||||||||||||||  | || || |||||||||||||||||||  |||||||||||    
T  17364280 taataatcattatacggctgttcttttcaatttaaatagaagattgctcttttaaaaa 17364337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29288474 - 29288418
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaa 57  Q
    ||||||| ||||||||  | || || ||||||||||||||||||| |||||||||||    
T  29288474 taataattattatacggatgttcttttcaatttaaatagaagattgatcttttaaaa 29288418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 6087104 - 6086973
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    |||||| |||||||||||| ||||| |||||||||||| ||||||||| ||||||||| | |||| |  |||||||||| | || ||||||||||| |||    
T  6087104 taataaccattatacgagtgttattttcaatttaaatataagattaatattttaaaaa-attgtgcg-cttttttattagggacctatttttactacgag 6087007  T
Q  101 agccaagcctctaatttcataggaacggctctat 134  Q
    |||| |||||| | ||| ||||||||||||||||    
T  6087006 agccgagcctccagttttataggaacggctctat 6086973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 6166418 - 6166537
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    ||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| | || | || ||||||||||    | |||||||||||| ||    
T  6166418 taataatcattatacgagtgttattttaaatttaaatagaagattaatcttttaaaaacattgagtgt-ttttttattagaagcctatttttactataag 6166516  T
Q  101 agccaagcctctaatttcata 121  Q
    | ||||||||| |||||||||    
T  6166517 aaccaagcctccaatttcata 6166537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 18886210 - 18886338
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||  |  |||||||||| | |  |||||||||||  ||    
T  18886210 taataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaaattgtacgctttttttattagggatctatttttactacaag 18886309  T
Q  101 agccaagcctctaatttcataggaacggc 129  Q
    || | |||||||| ||| ||||| |||||    
T  18886310 agtcgagcctctagttttatagggacggc 18886338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 16061508 - 16061380
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    |||||| |||||||| ||| ||||| ||||||||||||||||||| |||||||||||| | |||| || ||||||||||    | ||||||||||| |||    
T  16061508 taataaccattatacaagtgttattttcaatttaaatagaagattgatcttttaaaaaaattgtgcgttttttttattagaggcctatttttactacgag 16061409  T
Q  101 agccaagcctctaatttcataggaacggc 129  Q
    |||| |||||| | ||| ||||| |||||    
T  16061408 agccgagcctccagttttatagggacggc 16061380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 6131994 - 6132051
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  6131994 taataatcattatacgagtgttattttcaatttaaatagaagattaatctttttaaaa 6132051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 38138802 - 38138879
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttatt 78  Q
    ||||||||||||||||||| ||||| |||||||||||| || |||||||||||||||| | |||| || |||||||||    
T  38138802 taataatcattatacgagtgttattttcaatttaaataaaatattaatcttttaaaaaaattgtgcgttttttttatt 38138879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 32728030 - 32727973
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    |||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||||||    
T  32728030 taataaccattataggagtgttattttcaatttaaatagaagattaatcttttaaaaa 32727973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 13751498 - 13751387
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgag-tgttttttattaagtacttatttttactatga 99  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| | |||| | | ||||||| || |  | ||||||||||||||    
T  13751498 taataatcattatacgagtgttattttcaatttaaatagaagattaatcttttcaaaaaattgtgcgtttttttttactaggagcctatttttactatga 13751399  T
Q  100 gagccaagcctc 111  Q
    ||| ||||||||    
T  13751398 gagtcaagcctc 13751387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 44004374 - 44004266
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| | |||| || |||||||||| | |  | |||||||||||||    
T  44004374 taataatcattatacgagtgttattttcaatttaaatagaagatttatcttttaaaaaaattgtg-gt-ttttttattagggatctgtttttactatgag 44004277  T
Q  101 agccaagcctc 111  Q
    |||| ||||||    
T  44004276 agccgagcctc 44004266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 9946757 - 9946814
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  9946757 taataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaa 9946814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 21466943 - 21466818
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgag-----tgttttttattaagtacttatttttact 95  Q
    |||||||||||||| |||| ||||| ||||| |||| ||||||||||||||||||||| | |||| |     | ||||||||||||  | ||||||||||    
T  21466943 taataatcattataagagtgttattttcaatataaacagaagattaatcttttaaaaaaattgtgcgtttttttttttttattaagggcctatttttact 21466844  T
Q  96 atgagagccaagcctctaatttcata 121  Q
    |||||||||||||||| | |||||||    
T  21466843 atgagagccaagcctccagtttcata 21466818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 24534938 - 24534995
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    ||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||||    
T  24534938 taataatcattatacgagtgttattttcaatttaaacagaaaattaatcttttaaaaa 24534995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 6976620 - 6976519
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    ||||||||||||||||| | ||||| ||||||||||| ||||| |||| |||| |||| | ||||  | ||| |||||||| || |||||||| ||||||    
T  6976620 taataatcattatacgaatgttattttcaatttaaattgaagaataatttttttaaaaaattgtgcatttttattattaaggacctatttttattatgag 6976521  T
Q  101 ag 102  Q
    ||    
T  6976520 ag 6976519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 33474651 - 33474706
Alignment:
Q  3 ataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    |||||||||||| || | ||||| | ||||||||| ||||||||||||||||||||    
T  33474651 ataatcattatatgaatgttatttttaatttaaattgaagattaatcttttaaaaa 33474706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 50509829 - 50509931
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| | |||| |  |||||||||| |  | |||||||||||||||    
T  50509829 taataatcattatacgagtgttattttcaatttaaatagaaaattaatcttttaaaaaaattgtg-gatttttttattaggggcctatttttactatgag 50509927  T
Q  101 agcc 104  Q
    ||||    
T  50509928 agcc 50509931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26687749 - 26687692
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  26687749 taataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaa 26687692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24892066 - 24892009
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    |||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  24892066 taataaccattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaa 24892009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 7380430 - 7380303
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    |||||| ||| ||| |||| ||||| |||||||||||||||||||||||||||||||| | ||||  | |||||||||| |  | ||||||||||| |||    
T  7380430 taataaccataatatgagtgttattttcaatttaaatagaagattaatcttttaaaaaaattgtgcat-ttttttattaggggcctatttttactacgag 7380332  T
Q  101 agccaagcctctaatttcataggaacggc 129  Q
    || | |||||| ||||| ||||| |||||    
T  7380331 agacgagcctccaattttatagggacggc 7380303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 9672535 - 9672592
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    ||||||||||||||||||| ||||| | |||||||||||||||||||||||| |||||    
T  9672535 taataatcattatacgagtgttattttaaatttaaatagaagattaatctttaaaaaa 9672592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 23688437 - 23688381
Alignment:
Q  2 aataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||    
T  23688437 aataattattatacgagtgttattttcaatttaaatagaagattattcttttaaaaa 23688381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 50262528 - 50262648
Alignment:
Q  4 taatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagc 103  Q
    |||||||||||||| ||||||| |||||||||||||||||||| |||||| |||| | | |  || |||||||||| | || |||||||||||| | ||     
T  50262528 taatcattatacga-tattattttcaatttaaatagaagattattctttttaaaaaaat-tatgt-ttttttattagggacatatttttactataaaagt 50262624  T
Q  104 caagcctctaatttcataggaacg 127  Q
    | |||||  |||||||||||||||    
T  50262625 cgagccttcaatttcataggaacg 50262648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5882584 - 5882527
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    ||||||| ||||||||||  ||||| ||||||| |||||||||||||||||| |||||    
T  5882584 taataattattatacgagcgttattttcaattttaatagaagattaatctttaaaaaa 5882527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 42624799 - 42624913
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    |||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||| | | ||  | |||||||||||  || |||||| |||| |||    
T  42624799 taataaccattatacgagtgttaatatcaatttaaatagaagattaatcttttaaaaa-attatgcat-ttttttattaaaaacctattttaactacgag 42624896  T
Q  101 agccaagcctctaattt 117  Q
    |||||||||||||||||    
T  42624897 agccaagcctctaattt 42624913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 54561144 - 54561252
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgag 100  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||| | ||||  | |||||||||||  |  ||||||||| |||||    
T  54561144 taataatcattatatgagtgttattttcaatttaaatagaagattaatctttaaaaaa-attgtgcat-ttttttattaaagaactatttttacaatgag 54561241  T
Q  101 agccaagcctc 111  Q
    |||| ||||||    
T  54561242 agccgagcctc 54561252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 284326 - 284269
Alignment:
Q  1 taataatcattatacgagtattattctcaatttaaatagaagattaatcttttaaaaa 58  Q
    ||||||||||||| ||||| ||||| | |||||| ||||||| ||||||| |||||||    
T  284326 taataatcattatgcgagtgttatttttaatttagatagaagtttaatctcttaaaaa 284269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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