View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5311_high_63 (Length: 238)
Name: NF5311_high_63
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_high_63 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 27548668 - 27548454
Alignment:
| Q |
5 |
ttcttctgagaaactcagtatccagaaatcacatactattacaactaaatcaagttaatctagctgaactcattaaacgaagataaagctctcctagtac |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
27548668 |
ttcttctgagaaactcagtatccagaaatcacatactattgcaactaaatcatgttaatctagctgaactcatttaaagaagataaagctctcctggtac |
27548569 |
T |
|
| Q |
105 |
ctatcttttctattcactcaaatccagcgtccttcataaggaaaatcaaacttcttacaacttggatgaacaaataagcattcattcatactaaagttct |
204 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
27548568 |
ctatcttttctattcactcgaatccagcatccttcataaggaaaatcaaacttcttacgacttggatgaacaaataag----cattgatactaaagttct |
27548473 |
T |
|
| Q |
205 |
gttattttgttaattatat |
223 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
27548472 |
gatattttgttaattatat |
27548454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University