View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5311_high_75 (Length: 211)

Name: NF5311_high_75
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5311_high_75
NF5311_high_75
[»] chr5 (14 HSPs)
chr5 (16-211)||(37824293-37824488)
chr5 (16-211)||(37400379-37400574)
chr5 (16-211)||(37712022-37712217)
chr5 (14-211)||(37533498-37533695)
chr5 (14-211)||(37640270-37640467)
chr5 (16-211)||(37594722-37594917)
chr5 (16-211)||(37697185-37697380)
chr5 (14-211)||(37703066-37703263)
chr5 (14-207)||(37436109-37436302)
chr5 (41-211)||(37392484-37392654)
chr5 (19-118)||(37412846-37412945)
chr5 (30-133)||(37429208-37429311)
chr5 (142-207)||(37412949-37413014)
chr5 (39-148)||(37381925-37382034)
[»] chr4 (2 HSPs)
chr4 (14-211)||(16842441-16842638)
chr4 (170-208)||(24217461-24217499)
[»] chr3 (1 HSPs)
chr3 (18-211)||(14553508-14553701)
[»] chr8 (1 HSPs)
chr8 (170-209)||(23496081-23496120)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 37824488 - 37824293
Alignment:
Q  16 cactttcctctaacaacctgacaggccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggccc 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37824488 cactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttcttatttatatttatcatctaacaaactagttggccc 37824389  T
Q  116 aattccaattgaaatcacaaaacattcaaaattgagttttgtggaattgaacagtaacatgttaaatggaacaattccacattggtgttattcttt 211  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||| || | |  ||||||||||||||||||||||||||||||||||||||||||    
T  37824388 aattccaattgaaatcacaaaacgttcaaaattgagtattgtggatttaagctttaacatgttaaatggaacaattccacattggtgttattcttt 37824293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 37400379 - 37400574
Alignment:
Q  16 cactttcctctaacaacctgacaggccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggccc 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37400379 cactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttatcatctaacaaactagttggccc 37400478  T
Q  116 aattccaattgaaatcacaaaacattcaaaattgagttttgtggaattgaacagtaacatgttaaatggaacaattccacattggtgttattcttt 211  Q
    ||||||||||||||||||||||| |||||||||||| | ||||   |||     ||||||||||||||||||||||||||||||||||||||||||    
T  37400479 aattccaattgaaatcacaaaacgttcaaaattgagctatgtgtttttgggtgataacatgttaaatggaacaattccacattggtgttattcttt 37400574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 37712217 - 37712022
Alignment:
Q  16 cactttcctctaacaacctgacaggccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggccc 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||    
T  37712217 cactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcagataacaaactagttggccc 37712118  T
Q  116 aattccaattgaaatcacaaaacattcaaaattgagttttgtggaattgaacagtaacatgttaaatggaacaattccacattggtgttattcttt 211  Q
    ||||||||||||||||||||||| |||||||||||| | ||||   ||| |   ||||||||||||||||||||||||||| ||||||||||||||    
T  37712117 aattccaattgaaatcacaaaacgttcaaaattgagctatgtgtttttggatgataacatgttaaatggaacaattccacagtggtgttattcttt 37712022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 37533695 - 37533498
Alignment:
Q  14 atcactttcctctaacaacctgacaggccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggc 113  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||  ||||  |||||||| |||||||||||||||     
T  37533695 atcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcacctttctattttaggtttatcatataacaaactagttggg 37533596  T
Q  114 ccaattccaattgaaatcacaaaacattcaaaattgagttttgtggaattgaacagtaacatgttaaatggaacaattccacattggtgttattcttt 211  Q
    ||||||||||||||||||||||||| |||||||||||| | |||||  ||||    ||||||||||||||||||||||||||||||||||||||||||    
T  37533595 ccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgggtttgagtgataacatgttaaatggaacaattccacattggtgttattcttt 37533498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 37640467 - 37640270
Alignment:
Q  14 atcactttcctctaacaacctgacaggccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggc 113  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  37640467 atcactttactttaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcatataacaaactagttggc 37640368  T
Q  114 ccaattccaattgaaatcacaaaacattcaaaattgagttttgtggaattgaacagtaacatgttaaatggaacaattccacattggtgttattcttt 211  Q
    |||||||||||||||||| |||||| ||| |||||||| | |||||  ||| |   ||||||||||||||||||||||||||||||||||||||||||    
T  37640367 ccaattccaattgaaatcgcaaaacgttccaaattgagatatgtgggtttggatgataacatgttaaatggaacaattccacattggtgttattcttt 37640270  T

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Target: chr5; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 37594917 - 37594722
Alignment:
Q  16 cactttcctctaacaacctgacaggccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggccc 115  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||  ||||  |||||||| ||||||||||||||| ||    
T  37594917 cactttcctttaacaacctaacaggccaagttccatcatcactttttcatctacctcacctttctattttaggtttatcatataacaaactagttgggcc 37594818  T
Q  116 aattccaattgaaatcacaaaacattcaaaattgagttttgtggaattgaacagtaacatgttaaatggaacaattccacattggtgttattcttt 211  Q
    ||||||||||||||||||||||| |||||||||||| | |||||  ||||    ||||||||||||||||||||||||||||||||||||||||||    
T  37594817 aattccaattgaaatcacaaaacgttcaaaattgagctatgtgggtttgagggataacatgttaaatggaacaattccacattggtgttattcttt 37594722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 37697380 - 37697185
Alignment:
Q  16 cactttcctctaacaacctgacaggccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggccc 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| |||||  |||||||| ||||||||||||||| ||    
T  37697380 cactttcctctaacaacctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttaggtttatcatttaacaaactagttgggcc 37697281  T
Q  116 aattccaattgaaatcacaaaacattcaaaattgagttttgtggaattgaacagtaacatgttaaatggaacaattccacattggtgttattcttt 211  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||   ||| |   ||||||||||||||||||||||||||||||||||||||||||    
T  37697280 aattccaattgaaatcacaaaacgttccaaattgagttatgtgtttttggatgataacatgttaaatggaacaattccacattggtgttattcttt 37697185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 37703263 - 37703066
Alignment:
Q  14 atcactttcctctaacaacctgacaggccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggc 113  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |  ||||  |||||||| |||||||||||||||     
T  37703263 atcactttcctctaacaagctaacaggccaagttccatcatcactttttcatctacctcacctttttattttaggtttatcatttaacaaactagttggg 37703164  T
Q  114 ccaattccaattgaaatcacaaaacattcaaaattgagttttgtggaattgaacagtaacatgttaaatggaacaattccacattggtgttattcttt 211  Q
    ||||||||||||||||||||||||| |||||||||||| | |||||  ||||    ||||||||||||||||||||||||||||||||||||||||||    
T  37703163 ccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgggtttgagggataacatgttaaatggaacaattccacattggtgttattcttt 37703066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 37436302 - 37436109
Alignment:
Q  14 atcactttcctctaacaacctgacaggccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggc 113  Q
    |||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||| ||||||||||||||||    
T  37436302 atcactttcctccaacagcctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttagatttatcatttaacaaactagttggc 37436203  T
Q  114 ccaattccaattgaaatcacaaaacattcaaaattgagttttgt-ggaattgaacagtaacatgttaaatggaacaattccacattggtgttatt 207  Q
    ||||||||||||||||| ||||||| || ||||||||| | ||| ||  | ||| | ||||||||||||||||||||||||||| ||||||||||    
T  37436202 ccaattccaattgaaattacaaaacgtttaaaattgagctatgtgggtctagaata-taacatgttaaatggaacaattccacagtggtgttatt 37436109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 211
Target Start/End: Original strand, 37392484 - 37392654
Alignment:
Q  41 ccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggcccaattccaattgaaatcacaaaacat 140  Q
    ||||||||||||||||||||||||||||||  | ||||||  |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||      
T  37392484 ccaagttccatcatcactttttcatctacccaacctttcttttttagatttatcatctaacaaactagttggcccaattccagttcaaatcacaaaacgc 37392583  T
Q  141 tcaaaattgagttttgtggaattgaacagtaacatgttaaatggaacaattccacattggtgttattcttt 211  Q
    |||||||||||  ||||| | ||      ||||||||| ||||| |||||||| || ||||||||||||||    
T  37392584 tcaaaattgagcattgtgaatttaggttctaacatgtttaatggtacaattccgcagtggtgttattcttt 37392654  T

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Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 37412846 - 37412945
Alignment:
Q  19 tttcctctaacaacctgacaggccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggcccaat 118  Q
    |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||| ||||| ||||||||| ||| ||| |||||||||||||    
T  37412846 tttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 37412945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 37429311 - 37429208
Alignment:
Q  30 aacctgacaggccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggcccaattccaattgaaa 129  Q
    ||||| ||||||||||||||||||||| | ||||||||| |||| ||||||   ||| ||||||| | ||| ||| ||| |||||||||||| ||| |||    
T  37429311 aacctaacaggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaa 37429212  T
Q  130 tcac 133  Q
    ||||    
T  37429211 tcac 37429208  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 37412949 - 37413014
Alignment:
Q  142 caaaattgagttttgtggaattgaacagtaacatgttaaatggaacaattccacattggtgttatt 207  Q
    ||||||||||| ||||||| || || | ||| |||||||||||||||| ||| |||||||||||||    
T  37412949 caaaattgagtattgtggatttaaataataaaatgttaaatggaacaaatcctcattggtgttatt 37413014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 37381925 - 37382034
Alignment:
Q  39 ggccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggcccaattccaattgaaatcacaaaac 138  Q
    |||| ||||||||||||||| ||| ||||  || | |||||| || || ||||| ||  ||| ||| |||| || || ||||||| ||||||||| ||||    
T  37381925 ggcctagttccatcatcactgtttaatctgactgagctttctcatctagatttaacaaataataaattagtaggtcctattccaactgaaatcactaaac 37382024  T
Q  139 attcaaaatt 148  Q
    ||||||||||    
T  37382025 attcaaaatt 37382034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 16842441 - 16842638
Alignment:
Q  14 atcactttcctctaacaacctgacaggccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggc 113  Q
    |||||||||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||    
T  16842441 atcactttcctctaacagtctaacaggccaagttccatcatcactttttcatctaccttatctttctaatttatatttatcatttaacaaactggttggc 16842540  T
Q  114 ccaattccaattgaaatcacaaaacattcaaaattgagttttgtggaattgaacagtaacatgttaaatggaacaattccacattggtgttattcttt 211  Q
    ||||||||||||||||||||||||  |||||||||||| | |||||  ||||     |||||||||||||||||||||||| ||||||||||||||||    
T  16842541 ccaattccaattgaaatcacaaaaacttcaaaattgagctatgtgggtttgagtgagaacatgttaaatggaacaattccaaattggtgttattcttt 16842638  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 24217461 - 24217499
Alignment:
Q  170 taacatgttaaatggaacaattccacattggtgttattc 208  Q
    |||||||||||||||||||||||| || |||||||||||    
T  24217461 taacatgttaaatggaacaattccgcaatggtgttattc 24217499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 14553701 - 14553508
Alignment:
Q  18 ctttcctctaacaacctgacaggccaagttccatcatcactttttcatctacctcatctttctgatttatatttatcatctaacaaactagttggcccaa 117  Q
    |||| ||||||||||||  |||||||||||||||||||||||||| |||||||||| ||||||  ||||| |||||||||||||||||||||||| || |    
T  14553701 cttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttcttttttatgtttatcatctaacaaactagttgggccga 14553602  T
Q  118 ttccaattgaaatcacaaaacattcaaaattgagttttgtggaattgaacagtaacatgttaaatggaacaattccacattggtgttattcttt 211  Q
    || |||||||||||||||||| |||||||||||| | |||||| || |    ||||||||||||||||||||||||||||||||||||||||||    
T  14553601 ttgcaattgaaatcacaaaacgttcaaaattgagctatgtggatttaagttataacatgttaaatggaacaattccacattggtgttattcttt 14553508  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 23496120 - 23496081
Alignment:
Q  170 taacatgttaaatggaacaattccacattggtgttattct 209  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  23496120 taacatgttaaatggaacaattccacgttggtgtttttct 23496081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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