View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_high_78 (Length: 202)
Name: NF5311_high_78
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_high_78 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 5482308 - 5482123
Alignment:
| Q |
16 |
aagtttcctatagaggctggtatatgacctgagatacctgagtgtgaattgacagagttgtttgaaagatcaagaaagagcaaactgttaaattgcccta |
115 |
Q |
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| T |
5482308 |
aagtttcctatagaggttggtatatgacctgagatacctgagtgtgaattgacagagttgtttgaaagatcaagaaagaacaaactgttaaattgcccta |
5482209 |
T |
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| Q |
116 |
aagaatgaggcaatttcccagttagttgattactacccaaatttaaaaacttcaggctttgggttccacaagacaaggcctcaatc |
201 |
Q |
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| T |
5482208 |
aagaatgaggcaatttcccagttagttgattactacccaaatttaaaaacttcaggctttggtttccacaagacaaggcctcaatc |
5482123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 5477240 - 5477057
Alignment:
| Q |
16 |
aagtttcctatagaggctggtatatgacctgagatacctgagtgtgaattgacagagttgtttgaaagatcaagaaagagcaaactgttaaattgcccta |
115 |
Q |
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| T |
5477240 |
aagtttcctatagatgttggtataggacctgagatc---gtgtgtgagttcaccgggtttgttgacaaatcaagataaaacaaactagtaaatttcccta |
5477144 |
T |
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| Q |
116 |
aagaatgaggcaatttcccagttagttgattactacccaaatttaaaaacttcaggctttgggttccacaagacaaggcctcaatca |
202 |
Q |
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| T |
5477143 |
atgaatgaggcaatttcccagttagttgattaaaccttaaatctaaaaactctaggctttggttgctacaagacaatgcctctatca |
5477057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 5467512 - 5467427
Alignment:
| Q |
112 |
cctaaagaatgaggcaatttcccagttagttgattactacccaaatttaaaaacttcaggctttgggttccacaagacaaggcctc |
197 |
Q |
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| T |
5467512 |
cctaatgaatgaggcaatttcccagttagttgattataattcaaatctagaacctccaggctttggttgctacaagacaaggcctc |
5467427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 5496150 - 5495966
Alignment:
| Q |
16 |
aagtttcctatagaggctggtatatgacctgagatacctgagtgtgaattgacagagttgtttgaaagatcaagaaagagcaaactgttaaattgcccta |
115 |
Q |
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|||||||||||||| | |||||| ||||||||| ||||||||||||||| || | ||| |||| | ||||| | || | || |||| | ||||| |
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| T |
5496150 |
aagtttcctatagatgttggtattggacctgagacacctgagtgtgaatttactgtgtttcttgatatgtcaagcctaaacagattggtaaacttcccta |
5496051 |
T |
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| Q |
116 |
aagaatgaggcaatttcccagttagttgattactacccaaatttaaaaacttcaggctttgggttccacaagacaaggcctcaat |
200 |
Q |
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| T |
5496050 |
aagaatgaggcaatttcccagttagttggttataactcaaatccaacaacatcaaactttggttgctacaagacatggcctcaat |
5495966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5501182 - 5501139
Alignment:
| Q |
16 |
aagtttcctatagaggctggtatatgacctgagatacctgagtg |
59 |
Q |
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| T |
5501182 |
aagtttcctatagatgctggtataggacctgagatacctgagtg |
5501139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 5490365 - 5490320
Alignment:
| Q |
16 |
aagtttcctatagaggctggtatatgacctgagatacctgagtgtg |
61 |
Q |
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| T |
5490365 |
aagtttcctatagatgctggtataggacctgagacacctgagtgtg |
5490320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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