View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_10 (Length: 485)
Name: NF5311_low_10
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 23 - 468
Target Start/End: Complemental strand, 28903160 - 28902712
Alignment:
| Q |
23 |
gtaatttgattgaattcacttgtaataaagttttataaaggaaatataaatacatacattttccttcttcnnnnnnncttcaa-gaaatgacaaatatac |
121 |
Q |
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| T |
28903160 |
gtaatttgattgaattcacttgcaataaagttttataaaggaaatataaatacatacattttccttcttctttttttcttcaaagaaatgacaaatatac |
28903061 |
T |
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| Q |
122 |
ttgtatttatgatttagaagaagnnnnnnnnnncttcaccaaaaatctaattattaattagactttacttaacttccaatcaaattttaaattattacaa |
221 |
Q |
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| T |
28903060 |
ttgtatttatgatttagaagaaaaaaaaataaacttcaccaaaaatctaattattaattagactttacttaactttcaatcaaattttaaattattacaa |
28902961 |
T |
|
| Q |
222 |
cttctttaaaagaaaaacacaataaacaatnnnnnnnnnnnntgaaatctctttaaaagcccttgattcactaaagacaaaaataaacacattttaacaa |
321 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28902960 |
cttctttaaaagaaaaacacaataaacaataaaaaaaaata-tgaaatctttttaaaagcccttgattcactaaagacaaaaataaacacattttaacaa |
28902862 |
T |
|
| Q |
322 |
ttgacaagnnnnnnnnnnn---ctaagcatctcctctacatatgcagcagttgccaaatttcccttttttcataaacaagttgaagtcccactgaactga |
418 |
Q |
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| T |
28902861 |
ttgacaagaaaaaaaaaaaaaactaagcatctcctctacatatgcagcagttgccaaatttcccttttttcataaacaagttgaagtcccactgaactga |
28902762 |
T |
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| Q |
419 |
actcacctcgccggaaaacgctgccagcgtttttcgtccgccgtcagata |
468 |
Q |
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| T |
28902761 |
actcacctcgccggaaaacgctgccagagtttttcgtccgtcgtcagata |
28902712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 28954980 - 28955024
Alignment:
| Q |
172 |
ttattaattagactttacttaacttccaatcaaattttaaattat |
216 |
Q |
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| T |
28954980 |
ttattagttagactttacttacctttcgatcaaattttaaattat |
28955024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 29675888 - 29675932
Alignment:
| Q |
178 |
attagactttacttaacttccaatcaaattttaaattattacaac |
222 |
Q |
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|||| |||||||||| |||| |||| ||||||||||||||||||| |
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| T |
29675888 |
attaaactttacttaccttctaatcgaattttaaattattacaac |
29675932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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