View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_12 (Length: 480)
Name: NF5311_low_12
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 8154510 - 8154046
Alignment:
| Q |
1 |
ttcaccaaaacttgtctctaaagtttccttggttaagacaatgactatgagagcaatgagaagaaacacaaaagttaacaccctcaaaactaaaagaaca |
100 |
Q |
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| T |
8154510 |
ttcaccaaaacttgtctctaaagtttccttggttaagacaatgactatgagagcaatgagaagaaacacaaaagttaacaccctcaaaagtaaaagaaca |
8154411 |
T |
|
| Q |
101 |
attcttgaaaccgttgagcttgagggtgcactagtaatagtcgttgcagtttctgttgctgttgcactgtgtgtgttattctccatctcaaaaccttaca |
200 |
Q |
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| T |
8154410 |
attcttgaaaccgttgagcttgagggtgcactagtaatagtcgttgcagttgatgttgctgttgcactgtttgtgttattctccatctcaaaaccttata |
8154311 |
T |
|
| Q |
201 |
atagttctaaaacaaattaaaactttattttcttgt-acaatatcatgtagtttgtgttcttttatagcataaaattgataaatttaaataaccaacata |
299 |
Q |
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| T |
8154310 |
atagttctaaaacaaattaaaactttattttcttgtaaaaatatcatgtagtttgtggtcatttata-catgatattgataaatttaaatagcca--aga |
8154214 |
T |
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| Q |
300 |
taagtacatggtcaacttgccaagtagcttaatggaatgattttgaataaaatagaaacggggtgactttaaaaatagtggcatcacaacgtgtgcatca |
399 |
Q |
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| T |
8154213 |
taagtacaaggtcaacttgccaagtagcttaatggaatgattttgaataaaataaaaac-gggtgagtttaaaaatagtggcatcacaacgtgtgcatca |
8154115 |
T |
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| Q |
400 |
tattggctagaatttcttgttgcttaaaattttctaccaaaaaactaacattttggtacattgacttca |
468 |
Q |
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| T |
8154114 |
tattggctagaatttcttgttgctaaaaattttctacgaaaaaactaacattttggtacattgacttca |
8154046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 8162384 - 8162269
Alignment:
| Q |
17 |
tctaaagtttccttggttaagacaatgactatgagagcaatgagaagaaacacaaaagttaacaccctcaaaactaaaagaacaattcttgaaaccgttg |
116 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| |||| |
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| T |
8162384 |
tctaaagtttcctttgttaagacaatgactatgaaagcaatgagaaggaacacaaaagttaacaccctcaaaagtaaaagaacagttcttgaaactgttg |
8162285 |
T |
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| Q |
117 |
agcttgagggtgcact |
132 |
Q |
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| T |
8162284 |
aacttgagggtgcact |
8162269 |
T |
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