View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5311_low_13 (Length: 471)

Name: NF5311_low_13
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5311_low_13
NF5311_low_13
[»] chr7 (5 HSPs)
chr7 (219-427)||(6695726-6695934)
chr7 (3-142)||(6695511-6695650)
chr7 (418-457)||(48609667-48609706)
chr7 (427-457)||(10618445-10618475)
chr7 (425-457)||(17855582-17855614)
[»] chr4 (8 HSPs)
chr4 (421-457)||(38591817-38591853)
chr4 (426-457)||(237630-237661)
chr4 (422-457)||(22618508-22618543)
chr4 (426-457)||(54715177-54715208)
chr4 (424-457)||(3692206-3692239)
chr4 (425-457)||(19387685-19387717)
chr4 (425-457)||(31070071-31070103)
chr4 (417-457)||(53461805-53461845)
[»] scaffold0076 (1 HSPs)
scaffold0076 (422-457)||(13756-13791)
[»] chr8 (3 HSPs)
chr8 (422-457)||(31336247-31336282)
chr8 (428-457)||(3904229-3904258)
chr8 (425-457)||(9013836-9013868)
[»] chr3 (4 HSPs)
chr3 (422-457)||(38416718-38416753)
chr3 (422-456)||(39634566-39634600)
chr3 (425-457)||(43612044-43612076)
chr3 (425-457)||(49330190-49330222)
[»] chr6 (2 HSPs)
chr6 (423-457)||(19415528-19415562)
chr6 (423-457)||(26377199-26377233)
[»] chr5 (2 HSPs)
chr5 (423-457)||(1402500-1402534)
chr5 (425-457)||(29789292-29789324)
[»] chr1 (6 HSPs)
chr1 (427-457)||(41999968-41999998)
chr1 (428-457)||(24245025-24245054)
chr1 (421-457)||(5981323-5981359)
chr1 (425-457)||(31308154-31308186)
chr1 (425-457)||(31844826-31844858)
chr1 (425-457)||(33073353-33073385)
[»] scaffold0155 (1 HSPs)
scaffold0155 (428-457)||(2432-2461)
[»] scaffold0007 (1 HSPs)
scaffold0007 (420-457)||(278161-278198)
[»] chr2 (5 HSPs)
chr2 (424-457)||(17600988-17601021)
chr2 (420-457)||(21734892-21734929)
chr2 (425-457)||(4034744-4034776)
chr2 (425-457)||(6430625-6430657)
chr2 (424-456)||(27024568-27024600)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 219 - 427
Target Start/End: Original strand, 6695726 - 6695934
Alignment:
Q  219 gtgacaatggaaatatgtcaattcacattataattagccatgacccatgattaacctaattatatatatgaatgatggcttttacattatatcaagtagt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6695726 gtgacaatggaaatatgtcaattcacattataattagccatgacccatgattaacctaattatatatatgaatgatggcttttacattatatcaagtagt 6695825  T
Q  319 acgtgattataagaaatgatggttatgattagactatacacccttctttgttccatcttttcaattttcattttgatatatacatctattttaatttgca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6695826 acgtgattataagaaatgatggttatgattagactatacacccttctttgttccatcttttcaattttcattttgatatatacatctattttaatttgca 6695925  T
Q  419 ttattttaa 427  Q
    |||||||||    
T  6695926 ttattttaa 6695934  T

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Target: chr7; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 6695511 - 6695650
Alignment:
Q  3 aagcaaaggccttgttgtggtgtcccttggtgtccaaatattatctctcacatgctgcaacgttaagaaaggtaaaagttgttgtcctctgcatgttatc 102  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6695511 aagcaaaggtcttgttgtggtgtcccttggtgtccaaatattatctctcacatgctgcaacgttaagaaaggtaaaagttgttgtcctctgcatgttatc 6695610  T
Q  103 tctatctgcaatagtaattcattcattgcatatatattat 142  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6695611 tctatctgcaatagtaattcattcattgcatatatattat 6695650  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 457
Target Start/End: Original strand, 48609667 - 48609706
Alignment:
Q  418 attattttaaggtgataactagggtacccatggaagaatg 457  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  48609667 attattttatggtgacaactagggtacccatggaagaatg 48609706  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 427 - 457
Target Start/End: Complemental strand, 10618475 - 10618445
Alignment:
Q  427 aggtgataactagggtacccatggaagaatg 457  Q
    |||||||||||||||||||||||||||||||    
T  10618475 aggtgataactagggtacccatggaagaatg 10618445  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 457
Target Start/End: Complemental strand, 17855614 - 17855582
Alignment:
Q  425 taaggtgataactagggtacccatggaagaatg 457  Q
    |||||||| ||||||||||||||||||||||||    
T  17855614 taaggtgacaactagggtacccatggaagaatg 17855582  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 457
Target Start/End: Complemental strand, 38591853 - 38591817
Alignment:
Q  421 attttaaggtgataactagggtacccatggaagaatg 457  Q
    |||||||||||| ||||||||||||||||||||||||    
T  38591853 attttaaggtgacaactagggtacccatggaagaatg 38591817  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 457
Target Start/End: Complemental strand, 237661 - 237630
Alignment:
Q  426 aaggtgataactagggtacccatggaagaatg 457  Q
    ||||||||||||||||||||||||||||||||    
T  237661 aaggtgataactagggtacccatggaagaatg 237630  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 457
Target Start/End: Original strand, 22618508 - 22618543
Alignment:
Q  422 ttttaaggtgataactagggtacccatggaagaatg 457  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22618508 ttttaaggtgacaactagggtacccatggaagaatg 22618543  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 457
Target Start/End: Complemental strand, 54715208 - 54715177
Alignment:
Q  426 aaggtgataactagggtacccatggaagaatg 457  Q
    ||||||||||||||||||||||||||||||||    
T  54715208 aaggtgataactagggtacccatggaagaatg 54715177  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Original strand, 3692206 - 3692239
Alignment:
Q  424 ttaaggtgataactagggtacccatggaagaatg 457  Q
    ||||||||| ||||||||||||||||||||||||    
T  3692206 ttaaggtgacaactagggtacccatggaagaatg 3692239  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 457
Target Start/End: Original strand, 19387685 - 19387717
Alignment:
Q  425 taaggtgataactagggtacccatggaagaatg 457  Q
    |||||||| ||||||||||||||||||||||||    
T  19387685 taaggtgacaactagggtacccatggaagaatg 19387717  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 457
Target Start/End: Original strand, 31070071 - 31070103
Alignment:
Q  425 taaggtgataactagggtacccatggaagaatg 457  Q
    |||||||| ||||||||||||||||||||||||    
T  31070071 taaggtgacaactagggtacccatggaagaatg 31070103  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 53461805 - 53461845
Alignment:
Q  417 cattattttaaggtgataactagggtacccatggaagaatg 457  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  53461805 catttttttaaggtgacaactagggtacccatgaaagaatg 53461845  T

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Target: scaffold0076 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 457
Target Start/End: Original strand, 13756 - 13791
Alignment:
Q  422 ttttaaggtgataactagggtacccatggaagaatg 457  Q
    ||||||||||| ||||||||||||||||||||||||    
T  13756 ttttaaggtgacaactagggtacccatggaagaatg 13791  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 457
Target Start/End: Complemental strand, 31336282 - 31336247
Alignment:
Q  422 ttttaaggtgataactagggtacccatggaagaatg 457  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31336282 ttttaaggtgacaactagggtacccatggaagaatg 31336247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 457
Target Start/End: Complemental strand, 3904258 - 3904229
Alignment:
Q  428 ggtgataactagggtacccatggaagaatg 457  Q
    ||||||||||||||||||||||||||||||    
T  3904258 ggtgataactagggtacccatggaagaatg 3904229  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 457
Target Start/End: Complemental strand, 9013868 - 9013836
Alignment:
Q  425 taaggtgataactagggtacccatggaagaatg 457  Q
    |||||||| ||||||||||||||||||||||||    
T  9013868 taaggtgacaactagggtacccatggaagaatg 9013836  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 457
Target Start/End: Original strand, 38416718 - 38416753
Alignment:
Q  422 ttttaaggtgataactagggtacccatggaagaatg 457  Q
    ||||||||||| ||||||||||||||||||||||||    
T  38416718 ttttaaggtgacaactagggtacccatggaagaatg 38416753  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 456
Target Start/End: Original strand, 39634566 - 39634600
Alignment:
Q  422 ttttaaggtgataactagggtacccatggaagaat 456  Q
    ||||||||||| |||||||||||||||||||||||    
T  39634566 ttttaaggtgacaactagggtacccatggaagaat 39634600  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 457
Target Start/End: Original strand, 43612044 - 43612076
Alignment:
Q  425 taaggtgataactagggtacccatggaagaatg 457  Q
    |||||||| ||||||||||||||||||||||||    
T  43612044 taaggtgacaactagggtacccatggaagaatg 43612076  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 457
Target Start/End: Complemental strand, 49330222 - 49330190
Alignment:
Q  425 taaggtgataactagggtacccatggaagaatg 457  Q
    |||||||| ||||||||||||||||||||||||    
T  49330222 taaggtgacaactagggtacccatggaagaatg 49330190  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 423 - 457
Target Start/End: Original strand, 19415528 - 19415562
Alignment:
Q  423 tttaaggtgataactagggtacccatggaagaatg 457  Q
    |||||||||| ||||||||||||||||||||||||    
T  19415528 tttaaggtgacaactagggtacccatggaagaatg 19415562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 423 - 457
Target Start/End: Original strand, 26377199 - 26377233
Alignment:
Q  423 tttaaggtgataactagggtacccatggaagaatg 457  Q
    |||||||||| ||||||||||||||||||||||||    
T  26377199 tttaaggtgacaactagggtacccatggaagaatg 26377233  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 423 - 457
Target Start/End: Original strand, 1402500 - 1402534
Alignment:
Q  423 tttaaggtgataactagggtacccatggaagaatg 457  Q
    |||||||||||||||||||||||||||||| ||||    
T  1402500 tttaaggtgataactagggtacccatggaaaaatg 1402534  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 457
Target Start/End: Original strand, 29789292 - 29789324
Alignment:
Q  425 taaggtgataactagggtacccatggaagaatg 457  Q
    |||||||| ||||||||||||||||||||||||    
T  29789292 taaggtgacaactagggtacccatggaagaatg 29789324  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 427 - 457
Target Start/End: Complemental strand, 41999998 - 41999968
Alignment:
Q  427 aggtgataactagggtacccatggaagaatg 457  Q
    |||||||||||||||||||||||||||||||    
T  41999998 aggtgataactagggtacccatggaagaatg 41999968  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 457
Target Start/End: Original strand, 24245025 - 24245054
Alignment:
Q  428 ggtgataactagggtacccatggaagaatg 457  Q
    ||||||||||||||||||||||||||||||    
T  24245025 ggtgataactagggtacccatggaagaatg 24245054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 457
Target Start/End: Complemental strand, 5981359 - 5981323
Alignment:
Q  421 attttaaggtgataactagggtacccatggaagaatg 457  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  5981359 atttaaaggtgacaactagggtacccatggaagaatg 5981323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 457
Target Start/End: Complemental strand, 31308186 - 31308154
Alignment:
Q  425 taaggtgataactagggtacccatggaagaatg 457  Q
    |||||||| ||||||||||||||||||||||||    
T  31308186 taaggtgacaactagggtacccatggaagaatg 31308154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 457
Target Start/End: Complemental strand, 31844858 - 31844826
Alignment:
Q  425 taaggtgataactagggtacccatggaagaatg 457  Q
    |||||||| ||||||||||||||||||||||||    
T  31844858 taaggtgacaactagggtacccatggaagaatg 31844826  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 457
Target Start/End: Complemental strand, 33073385 - 33073353
Alignment:
Q  425 taaggtgataactagggtacccatggaagaatg 457  Q
    |||||||| ||||||||||||||||||||||||    
T  33073385 taaggtgacaactagggtacccatggaagaatg 33073353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 457
Target Start/End: Original strand, 2432 - 2461
Alignment:
Q  428 ggtgataactagggtacccatggaagaatg 457  Q
    ||||||||||||||||||||||||||||||    
T  2432 ggtgataactagggtacccatggaagaatg 2461  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Complemental strand, 278198 - 278161
Alignment:
Q  420 tattttaaggtgataactagggtacccatggaagaatg 457  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  278198 tatttcaaggtgacaactagggtacccatggaagaatg 278161  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 17601021 - 17600988
Alignment:
Q  424 ttaaggtgataactagggtacccatggaagaatg 457  Q
    ||||||||| ||||||||||||||||||||||||    
T  17601021 ttaaggtgacaactagggtacccatggaagaatg 17600988  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Original strand, 21734892 - 21734929
Alignment:
Q  420 tattttaaggtgataactagggtacccatggaagaatg 457  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  21734892 tattttaaggtgacaactagggtactcatggaagaatg 21734929  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 457
Target Start/End: Complemental strand, 4034776 - 4034744
Alignment:
Q  425 taaggtgataactagggtacccatggaagaatg 457  Q
    |||||||| ||||||||||||||||||||||||    
T  4034776 taaggtgacaactagggtacccatggaagaatg 4034744  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 457
Target Start/End: Complemental strand, 6430657 - 6430625
Alignment:
Q  425 taaggtgataactagggtacccatggaagaatg 457  Q
    |||||| ||||||||||||||||||||||||||    
T  6430657 taaggtaataactagggtacccatggaagaatg 6430625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 456
Target Start/End: Complemental strand, 27024600 - 27024568
Alignment:
Q  424 ttaaggtgataactagggtacccatggaagaat 456  Q
    ||||||||| |||||||||||||||||||||||    
T  27024600 ttaaggtgacaactagggtacccatggaagaat 27024568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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