View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_16 (Length: 439)
Name: NF5311_low_16
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 51895607 - 51895353
Alignment:
| Q |
20 |
atcaggttcactagtgatctgacagatacattctttgatatgtaactcttgaattttgctcatttgtaaagtgattagtagagagtaaagcgttatttca |
119 |
Q |
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| T |
51895607 |
atcaggttcactagtgatctgacagatacattctttgatatgtaactcttgaattttgctcatttgtaaagtgattagtagagagcaaagcgttatttca |
51895508 |
T |
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| Q |
120 |
attacactaatgatttgttgtttgtgtataatgaacaattttgaattttgttggtgttcattaatggaggagagaatattctgaaaaagactaaaaacta |
219 |
Q |
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| T |
51895507 |
attacactaatgatttgttgtttgtgtataatgaacaattttgaattttgttggtgttcattaatggaggagagaatattccgaaaaagactaaaaacta |
51895408 |
T |
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| Q |
220 |
cagttaagctattctaaaactaacttatcattcatttgatttgataagctattct |
274 |
Q |
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| T |
51895407 |
cagttaagctattctaaaactaacttatcattcatttgatttgataagttattct |
51895353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 224 - 413
Target Start/End: Complemental strand, 51895363 - 51895175
Alignment:
| Q |
224 |
taagctattctaaaactaacttatcattcatttgatttgataagctattctttttcctacttatataagctagcaattggcatattatctaacgaaccaa |
323 |
Q |
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| T |
51895363 |
taagttattctaaaactaactt-tcattcatttgatttgataagctattctttttcctacttatataagctagcaattggcatattatctaacgaaccaa |
51895265 |
T |
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| Q |
324 |
acaatgactcgttcaattggatctatttatatctttctagaaagcatgactcgtcacctaaaatatctaattcaacttgagtctattcta |
413 |
Q |
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| T |
51895264 |
acaatgactcgttcaattagatctatttatatctttctagaaagcatgactcgtcacctaaaatatcttatgcaacttgagtctattcta |
51895175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 51895139 - 51895071
Alignment:
| Q |
176 |
ttcattaatggaggagagaatattctgaaaaagactaaaaactacagttaagctattctaaaactaactt |
245 |
Q |
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| T |
51895139 |
ttcactaatggagaaaagaatgttctaaacaagactaacaattaca-ttaagctattctaaaactaactt |
51895071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 394
Target Start/End: Original strand, 32439672 - 32439755
Alignment:
| Q |
311 |
tctaacgaaccaaacaatgactcgttcaattggatctatttatatctttctagaaagcatgactcgtcacctaaaatatctaat |
394 |
Q |
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| T |
32439672 |
tctaacaaactaatcaatgactcgtccaattgaatctatatatatcattctaaaacacatgagtaatcacctaaaatatctaat |
32439755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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