View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_19 (Length: 419)
Name: NF5311_low_19
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 45264529 - 45264930
Alignment:
| Q |
17 |
atgaatgtgtcaatttcttgcgggtgaaggttcataggtggagatgaatgtgtcatattcctacgtagttgtaggaatatgtcagctacatttgtggaaa |
116 |
Q |
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| T |
45264529 |
atgaatgtgtcaatttcttgggggtgaaggttcataggtggagatgaatgtgtcatattcctacgtagttgtaggaatatgtcagctgcatttgtgcaaa |
45264628 |
T |
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| Q |
117 |
gtatattgttctttaaacttccaaaatagctttcagacatccgaaattgatcattttatcttcaacggtagttaactatcgttcgctcagtaagatacaa |
216 |
Q |
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| T |
45264629 |
gcatattgttctttaagctttcaaaatagctttcagacacccgaaattgatcattttatcttcaacggtagttaactatcgttcgcttagtaagatacaa |
45264728 |
T |
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| Q |
217 |
tacaatggtgtcacaaaatgatatatattactcttctttaattgataatattgttttannnnnnnattgcattaagcttgccataaactaaactagtaac |
316 |
Q |
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| T |
45264729 |
tacaatggtgtcacaaaatgatatatattactcttctttaattgataatattgttttatttttttattgcattaagcttgccataaactaaactagtaac |
45264828 |
T |
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| Q |
317 |
attatttgaaaggagtaagaagaacttggcaattccacaatcagccatttttagctatttgaatggtggaagggattcccattcttattgattactctgt |
416 |
Q |
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| T |
45264829 |
attatttgaaaggagtaagaagaacttggcaattccacaatcagccatttttagctatttgaatggtggaa-agattcccattcttattgattactctgt |
45264927 |
T |
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| Q |
417 |
ccc |
419 |
Q |
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| T |
45264928 |
ccc |
45264930 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 46896211 - 46896252
Alignment:
| Q |
160 |
aaattgatcattttatcttcaacggtagttaactatcgttcg |
201 |
Q |
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| T |
46896211 |
aaattgatcattctatctccaacgatagttaactatcgttcg |
46896252 |
T |
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