View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_2 (Length: 614)
Name: NF5311_low_2
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 557; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 17 - 597
Target Start/End: Original strand, 6270482 - 6271062
Alignment:
| Q |
17 |
aataagtattttgacattcagtaacttaaatattcttgcaggttccgatgcaagctcatatacttgctgatatcaaccatgtaagagccgagatgacgga |
116 |
Q |
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| T |
6270482 |
aataagtattttgacattcagtaacttaaatattcttgcaggttccgatgcaagcttatatacttgctgatatcaaccatgtaagagccgagatgacgga |
6270581 |
T |
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| Q |
117 |
gcggtttgaccggattgaggagtcgaaccggaggatggagcggttttttggagggatgaagattggcgttggtggtgttgggtgggttgaggaagctgtg |
216 |
Q |
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| T |
6270582 |
gcggtttgaccggattgaggagtcgaaccggaggatggagcggttttttggagggatgaagattggcgttggtggtgttgggtgggttgagggagctgtg |
6270681 |
T |
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| Q |
217 |
aggtctagtgaggaagatgagggtagtttggggaatttggatttgagttttggtttggagtttgggaagaataaggttatggaaatggttgttggaagga |
316 |
Q |
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| T |
6270682 |
aggtctagtgaggaagatgagggtagtttggggaatttggatttgagttttggtttggagtttgggaagaataaggttatggaaatggttgttggaagga |
6270781 |
T |
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| Q |
317 |
aagatttttgtcttgttggaatttctgggattggtggatctgggaaaactactcttgccagagagatttgtagagatgaacaagtgagaagtaagtgata |
416 |
Q |
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| T |
6270782 |
aagatttttgtcttgttggaatttctgggattggtggatctgggaaaactactcttgccagagagatttgtagagatgaacaagtgagaggtaagtgata |
6270881 |
T |
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| Q |
417 |
atctattcattgttacatttgataatctagtttttactatttagggtggtgaattattcaaacatgctatctttaaagttaatcattaattgttttgttg |
516 |
Q |
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| T |
6270882 |
atctattcattgttacatttgataatctagtttttattatttagggtggtgaattattcaaatatgctatctttaaagtaaatcattaattgttttgttg |
6270981 |
T |
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| Q |
517 |
tcttgttgattggttcttagtttccatttttgatgatgacaacaagtttgtaacagcaatggccaaaaattttgtgcaacc |
597 |
Q |
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| T |
6270982 |
tcttgttgattggttcttagtttccatttttgatgatgacaacaagtttgtaacagcaatggccaaaaattttgtgcaacc |
6271062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 234 - 424
Target Start/End: Original strand, 6261687 - 6261877
Alignment:
| Q |
234 |
tgagggtagtttggggaatttggatttgagttttggtttggagtttgggaagaataaggttatggaaatggttgttggaaggaaagatttttgtcttgtt |
333 |
Q |
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| T |
6261687 |
tgagggtaattatgggaatttgagtttgagtgttggtttggatttggggaagaagaaagttaaggagatggttatgggaagagaggatttatgggttgtt |
6261786 |
T |
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| Q |
334 |
ggaatttctgggattggtggatctgggaaaactactcttgccagagagatttgtagagatgaacaagtgagaagtaagtgataatctattc |
424 |
Q |
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| T |
6261787 |
ggtattcatgggattggtggatctgggaaaacaactcttgttaaagagatttgtaaagatgaacaagtgagatgtaagtgatgatctattc |
6261877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 6261600 - 6261660
Alignment:
| Q |
162 |
ttttggagggatgaagattggcgttggtggtgttgggtgggttgaggaagctgtgaggtct |
222 |
Q |
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| T |
6261600 |
ttttggtgagatgaagattggcgtgggaggtggagggtgggtgcaggaagctgtgaggtct |
6261660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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