View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_22 (Length: 394)
Name: NF5311_low_22
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 43607303 - 43607476
Alignment:
| Q |
9 |
acatcatcatcatgcaattgcaaagccgccacgtttggatgcggatgagactttggggcatgaatctcagattaatttggaagatcgtgatcgtgttgaa |
108 |
Q |
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| T |
43607303 |
acatcatcatcatgcaattgcaaagccgccacgttttgatgcggatgagactttggggcatgaatctcagattaatttggaagatcgtgatcgtgttgaa |
43607402 |
T |
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| Q |
109 |
agcatggcccaagataaggttcaggaggcccaagataaagttcaggaggcccaaaatgatcaacgtgacgtagg |
182 |
Q |
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| T |
43607403 |
agcatggcccaagataaggttcaggaggcccaagataaagttcaggaggcccaaaatgatcaacgtgacgtagg |
43607476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 210 - 376
Target Start/End: Original strand, 43607505 - 43607671
Alignment:
| Q |
210 |
tcttcatgagtttggttcgttaagtgaataagagtttactatgacgtatgaggagtcactattttctctgtttcctgatccatgtttatctcgtagagta |
309 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43607505 |
tcttcatgagtttggttcgttaagtgaacaagagtttactatgacgtatgaggagtcactattttctctgtttcctgatccatgtttatctcgtagagta |
43607604 |
T |
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| Q |
310 |
gtgtgtgtttttagagagagaaaattagttgtatgttttgttattattagtgtttaaatatgtactg |
376 |
Q |
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| T |
43607605 |
gtgtgtgtttttagagagaaaaaattagttgtatgttttgttattgttagtgtttaaatatgtactg |
43607671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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