View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_23 (Length: 387)
Name: NF5311_low_23
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 27548690 - 27549068
Alignment:
| Q |
1 |
ttatgttatgtattcgtaggaaaatataaagaatttagatgcatgttagatcagggtttatgtttgatgaatttctgcataccaccatgtatagatttgt |
100 |
Q |
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| T |
27548690 |
ttatgtgatgtattcgtaggaaaatataaagaagtgagatgcatgttagaacagggtttatcttggaggaatttctgcataccaccgtgtatagatttgt |
27548789 |
T |
|
| Q |
101 |
tttccttttctgactgattgcatttcac-actgaatgctttgtagggaaaagatcgatacccatatccagttggctaccaagctgttagagctcataatg |
199 |
Q |
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| T |
27548790 |
tttccttttctgactgattgcatttttgtactgaatactttgtagggaaaagatcgatacccatatccagttggctaccaggctgttagagctcataatg |
27548889 |
T |
|
| Q |
200 |
gtactacttataagatggaaatacttgaaggcgacaatggtcctgaatttttggtttgtattcatgattctttgtgcttttatgttttgagttattccat |
299 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27548890 |
gtactacttataagatggaaatacttgaaggcgataatgggcctaaatttttggtttgtattcatgattctttgtgctttaatgttttgagttattccat |
27548989 |
T |
|
| Q |
300 |
attctaaatgtttcaacttgctttgagttttgtaacaatttaagttacttactgtttctacagatttcttctgatgatg |
378 |
Q |
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| T |
27548990 |
attataaatgtttcagcttgctttgaattttgtaacaatttaagttacttactgtttctacagatttcttctgatgatg |
27549068 |
T |
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