View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_26 (Length: 378)
Name: NF5311_low_26
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 53899274 - 53898922
Alignment:
| Q |
19 |
caaatatgtaggattcaatgtattttgaagactactagattttaaaagtgaaagtgcatagaagattataaaaagtggctgaaatttcattggaataa-t |
117 |
Q |
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| T |
53899274 |
caaatatgtaggattcaatgtattttgaagactactagattttaaaagtgaaagtgcatagaagattataaaaagtggctgaaatttcattggaataaat |
53899175 |
T |
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| Q |
118 |
ttattattgagagggacagattcttctcataaatctgtaaaacatgtatctcctattaaagaagttgtgcatttctttgttagaaaggagaatgaataca |
217 |
Q |
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| T |
53899174 |
ttattattgagagggacagattcttctcatcaatctgtaaaacatgtatctcctattaaagaagttgtgcatttctttgttagaaaggagaatgaataca |
53899075 |
T |
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| Q |
218 |
atacaggctttaaaaaggcattgggtcatgaggtgagatttatggttctgcacaattgaactacatctttaactcaaatgttaaaagctagtaatgtagc |
317 |
Q |
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| T |
53899074 |
atacaggctttaaaaaggcattgggtcatgaggtgagattgatggttcttcacaattgaactacatcttt-actcaaatgttaaaagctagtaatgtagc |
53898976 |
T |
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| Q |
318 |
cgaaattatgacaatgtctctcaattatgtaatgttccatgtttacctttgctt |
371 |
Q |
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| T |
53898975 |
cgaaattatgacaatgtctctcaattatgtaatgttccatgtttacctttgctt |
53898922 |
T |
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