View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_27 (Length: 377)
Name: NF5311_low_27
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 47 - 364
Target Start/End: Complemental strand, 18456749 - 18456433
Alignment:
| Q |
47 |
attcaaacaagtacagaatcaaattaatcaatatgtaccgtactttcacaagatcccacaaatattttatttctaatgaatcatatttaattattttgca |
146 |
Q |
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| T |
18456749 |
attcaaacaagtacagaatcaaattaatcaatatgtaccgtactttcacatgatcccacaaatattttatttctaatgaatcataattaattattttgta |
18456650 |
T |
|
| Q |
147 |
gaaagttaattattacgtgcatgtataaacgtacctcatctagcatgctaacaagctttgacttcttcatttgaagttcttgtctttgtgcagtgcttaa |
246 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18456649 |
gaaagttaattattacgtgcatgtataa-cgtacctcatctagcatgctaacaagctttgacttcttcatttgaagttcttgtctttgtgcagtgcttaa |
18456551 |
T |
|
| Q |
247 |
ttcagctacttgtttccctccatcgttttctcttccaccacttgaactagattcaatattcactttcctcttctctttattgttattactattacctcct |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18456550 |
ttcagctacttgtttccctccatcgttttctcttccaccacttgaactagattcaatattcactttcctcttctctttattgttattactattacctcct |
18456451 |
T |
|
| Q |
347 |
tccacagattctcctttg |
364 |
Q |
| |
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|||||||||||||||||| |
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| T |
18456450 |
tccacagattctcctttg |
18456433 |
T |
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