View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5311_low_29 (Length: 366)

Name: NF5311_low_29
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5311_low_29
NF5311_low_29
[»] chr8 (11 HSPs)
chr8 (17-353)||(1964415-1964751)
chr8 (104-183)||(2005494-2005571)
chr8 (294-353)||(2011943-2012002)
chr8 (109-183)||(2015888-2015960)
chr8 (102-183)||(2008874-2008953)
chr8 (88-183)||(1968048-1968141)
chr8 (52-153)||(2012517-2012621)
chr8 (102-154)||(2013448-2013500)
chr8 (100-149)||(2019303-2019352)
chr8 (294-353)||(1968628-1968687)
chr8 (102-183)||(1962462-1962541)
[»] chr1 (2 HSPs)
chr1 (192-287)||(5900614-5900709)
chr1 (102-183)||(5901641-5901720)
[»] chr3 (1 HSPs)
chr3 (84-183)||(18189409-18189506)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 1964415 - 1964751
Alignment:
Q  17 acaattttgctataacgctgtttcaaaatttgctataaaatctatataggtcttgggctaggtgactttcatgaacttggtctctaatttccatggagaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1964415 acaattttgctataacgctgtttcaaaatttgctataaaatctatataggtcttgggctaggtgactttcatgaacttggtctctaatttccatggagaa 1964514  T
Q  117 aaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattctaaatgctgggtttttcatgcaaattaagaactc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1964515 aaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattctaaatgctgggtttttcaagcaaattaagaactc 1964614  T
Q  217 gaaagaggggttttctgtcaatgctgaatattttggaaaagcgattatcagcaaaacaagcaacggatccatttcgggatcaagtcaagattacaaacac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1964615 gaaagaggggttttctgtcaatgctgaatattttggaaaagcgattatcagcaaaacaagcaacggatccatttcgggatcaagtcaagattacaaacac 1964714  T
Q  317 ttccttcaacatgttaaaagtttaagttttgctgatg 353  Q
    |||||||||||||||||||||||||||||||||||||    
T  1964715 ttccttcaacatgttaaaagtttaagttttgctgatg 1964751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 2005571 - 2005494
Alignment:
Q  104 tttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 183  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||  ||||| |||||| |||||||||||||||||||    
T  2005571 tttccatggagaaaacaattcatattgcagttgttccaggtgttgg--atatagccatttggtctctattcttcaattct 2005494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 294 - 353
Target Start/End: Complemental strand, 2012002 - 2011943
Alignment:
Q  294 gatcaagtcaagattacaaacacttccttcaacatgttaaaagtttaagttttgctgatg 353  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  2012002 gatcaagtcaagcttacaaatacttccttcaacatgttaaaagtttaagttttgctgatg 2011943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 2015960 - 2015888
Alignment:
Q  109 atggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 183  Q
    ||||||||||| ||||| |||||||||||||||||||||||  ||||| |||||| |||||||||||||||||||    
T  2015960 atggagaaaacaattcatattgcagttgttccaggtgttgg--atatagccatttggtctctattcttcaattct 2015888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 2008953 - 2008874
Alignment:
Q  102 aatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 183  Q
    ||||||||||||||||||  |||| |||||||||||||||||||||||  ||||| |||||| ||| |||||||||||||||    
T  2008953 aatttccatggagaaaacagttcatattgcagttgttccaggtgttgg--atatagccatttggtccctattcttcaattct 2008874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 1968048 - 1968141
Alignment:
Q  88 tgaacttggtctctaatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 183  Q
    ||||||||  ||| ||||||||||||||||||  |||| |||||||||||||||||||||||  |||||  ||||| ||| |||||||||||||||    
T  1968048 tgaacttgacctcaaatttccatggagaaaacagttcatattgcagttgttccaggtgttgg--atatagtcatttggtccctattcttcaattct 1968141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 153
Target Start/End: Complemental strand, 2012621 - 2012517
Alignment:
Q  52 taaaatctatataggtcttgggctaggtgactttcat----gaacttggtctctaatttccatggagaaaaccattcacattgcagttgttccaggtgtt 147  Q
    ||||||||||| | ||||| |||||||||| ||||||    |||||||| ||| |||||| ||||| ||||| ||||||||||| ||||||||||||||     
T  2012621 taaaatctatacaagtctttggctaggtgagtttcattcatgaacttggcctcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtc 2012523  T
Q  148 gggtat 153  Q
    ||||||    
T  2012522 gggtat 2012517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 2013500 - 2013448
Alignment:
Q  102 aatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtata 154  Q
    |||||||||||||||||  ||||| ||||||||||||||||||||||| ||||    
T  2013500 aatttccatggagaaaaaaattcatattgcagttgttccaggtgttggatata 2013448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 2019352 - 2019303
Alignment:
Q  100 ctaatttccatggagaaaaccattcacattgcagttgttccaggtgttgg 149  Q
    ||||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  2019352 ctaattttcatggagaaaacagttcatattgcagttgttccaggtgttgg 2019303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 353
Target Start/End: Original strand, 1968628 - 1968687
Alignment:
Q  294 gatcaagtcaagattacaaacacttccttcaacatgttaaaagtttaagttttgctgatg 353  Q
    |||||||||||| ||||||||||||||| | || | |||||  |||||||||||||||||    
T  1968628 gatcaagtcaagtttacaaacacttcctcccactttttaaacttttaagttttgctgatg 1968687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 1962462 - 1962541
Alignment:
Q  102 aatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 183  Q
    ||||| ||||||||||||  |||| |||||||||||||| ||||||||  ||||| ||| ||| || | |||||||||||||    
T  1962462 aattttcatggagaaaacagttcatattgcagttgttcctggtgttgg--atatagccacttattcccaattcttcaattct 1962541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 5900614 - 5900709
Alignment:
Q  192 ggtttttcatgcaaattaagaactcgaaagaggggttttctgtcaatgctgaatattttggaaaagcgattatcagcaaaacaagcaacggatcca 287  Q
    ||||||||  |||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  5900614 ggtttttccagcaagttaagaactccaaagatgggttttctgtcattgctgaatattttggaaaagggattatcagcaaaacaagcaatggatcca 5900709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 5901641 - 5901720
Alignment:
Q  102 aatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 183  Q
    ||||| |||||||||||| ||||||||||| ||| ||||||||| | ||  |||| ||||||||||||||||||| ||||||    
T  5901641 aattttcatggagaaaacaattcacattgctgttattccaggtgcttgg--tatagccatttagtctctattcttgaattct 5901720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 18189409 - 18189506
Alignment:
Q  84 ttcatgaacttggtctctaatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 183  Q
    ||||||||||| |  || |||||||||||| ||||| |||||||||||||||||||||||||||||||||  |  || |||||| |||||||||||||||    
T  18189409 ttcatgaacttagcatcaaatttccatggataaaacaattcacattgcagttgttccaggtgttgggtatgga--cacttagtccctattcttcaattct 18189506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University