View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_3 (Length: 585)
Name: NF5311_low_3
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 5230862 - 5230583
Alignment:
| Q |
15 |
atatagcaccaccgaaatcagtgtacctatagaataggtaagataaaaattaaacatatgatcccaaatgaaatatttatagctttaaattaatggtagc |
114 |
Q |
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| T |
5230862 |
atatagcaccaccgaaatcagtgtacctacagaataggtaacataaaaattaaacatatgatcccaaatgaaatatttatagctttaaattaatggtagc |
5230763 |
T |
|
| Q |
115 |
atttgaatgagcatgaattaccagccagaccaattctcagtccacattttgggtttaaagttctcgttgggagtgaaattttcacagtaatatccattgc |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5230762 |
atttgaatgagcatgacttaccagccagaccaattctcagtccacattttgggtttaaagttctcgttgggagtgaaattttcacagtaatatccattgc |
5230663 |
T |
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| Q |
215 |
aagtgtcaatctacaacatagttcagtaaatatatatcaaacagagaaagatgaaagtaagaataaattaatattagttt |
294 |
Q |
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| T |
5230662 |
aagtgtcaatctacaacatagttcagtaaatatatatcaaacagagaaagatgaaagtaagaataaattaatattagttt |
5230583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 337 - 572
Target Start/End: Complemental strand, 5230581 - 5230346
Alignment:
| Q |
337 |
taaacacacacattaacatgcaacacatcatctttaaagcaatgactccgacaaatatgtctgacacgacacagacacggacacaccaacaatgctaatg |
436 |
Q |
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| T |
5230581 |
taaacacacacattaacatgcaacacatcatctttaaagcaatgactccgacaaatatgtctgacacgacacagacacagacacaccaacaatgttaatg |
5230482 |
T |
|
| Q |
437 |
taaacttacaacgggatcaggggcgtcttcttgcttgcacatgtcccaaggtacaccagtatctagacctacagccatttgagcagcccattttgtgtaa |
536 |
Q |
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| T |
5230481 |
taaacttacaacgggatcaggggcgtcttcttgcttgcacatgtcccaaggtacaccagtatctagacctacagccatttgagcagcccattttgtgtaa |
5230382 |
T |
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| Q |
537 |
gcctttccaggagcaccaatttcccattccacaggt |
572 |
Q |
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| T |
5230381 |
gcctttccaggagcaccaatttcccattccacaggt |
5230346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 441 - 568
Target Start/End: Complemental strand, 17125543 - 17125416
Alignment:
| Q |
441 |
cttacaacgggatcaggggcgtcttcttgcttgcacatgtcccaaggtacaccagtatctagacctacagccatttgagcagcccattttgtgtaagcct |
540 |
Q |
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| T |
17125543 |
cttacaattggatcaggagcatcttcttgcttacacataacccatggaacaccagtgtttagtcctacagccatttgagaaaaccatttggtgtaagatt |
17125444 |
T |
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| Q |
541 |
ttccaggagcaccaatttcccattccac |
568 |
Q |
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| T |
17125443 |
ttccaggtgcaccaatttcccattccac |
17125416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 17126333 - 17126237
Alignment:
| Q |
133 |
taccagccagaccaattctcagtccacattttgggtttaaagttctcgttgggagtgaaattttcacagtaatatccattgcaagtgtcaatctaca |
229 |
Q |
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|||||||||| |||||| || ||||||||||| ||||| |||||| |||||||| ||| |||||||||||||||||||| || || |||||||||| |
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| T |
17126333 |
taccagccagtccaattttctgtccacatttttggtttgtagttcttgttgggagagaagttttcacagtaatatccattacaggtatcaatctaca |
17126237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 559
Target Start/End: Original strand, 42989289 - 42989409
Alignment:
| Q |
439 |
aacttacaacgggatcaggggcgtcttcttgcttgcacatgtcccaaggtacaccagtatctagacctacagccatttgagcagcccattttgtgtaagc |
538 |
Q |
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|||||||||| |||||||| || || ||||||||||||||| ||| || || || ||| | || ||||||||||| | || |||||||| ||||| | |
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| T |
42989289 |
aacttacaacaggatcaggagcatcatcttgcttgcacatgatccacggaactccggtaccaagtcctacagccatatctgctgcccatttggtgtagga |
42989388 |
T |
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| Q |
539 |
ctttccaggagcaccaatttc |
559 |
Q |
| |
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|| ||||||||||||||||| |
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| T |
42989389 |
tttaccaggagcaccaatttc |
42989409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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