View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5311_low_35 (Length: 316)

Name: NF5311_low_35
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5311_low_35
NF5311_low_35
[»] chr5 (3 HSPs)
chr5 (48-316)||(41900586-41900854)
chr5 (48-144)||(32268231-32268327)
chr5 (259-316)||(32268442-32268499)
[»] chr8 (3 HSPs)
chr8 (48-173)||(27922868-27922993)
chr8 (46-98)||(18314971-18315023)
chr8 (55-92)||(14003816-14003853)
[»] chr4 (7 HSPs)
chr4 (50-98)||(1601177-1601225)
chr4 (48-98)||(371296-371346)
chr4 (47-80)||(7225503-7225536)
chr4 (200-233)||(53761012-53761045)
chr4 (50-98)||(1755227-1755275)
chr4 (52-80)||(8183640-8183668)
chr4 (50-90)||(21833649-21833689)
[»] chr3 (1 HSPs)
chr3 (202-237)||(13469868-13469903)
[»] chr1 (1 HSPs)
chr1 (52-80)||(7554870-7554898)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 48 - 316
Target Start/End: Complemental strand, 41900854 - 41900586
Alignment:
Q  48 tggaaaaggataaagacctcaatgttggtctctggcggagagcaaaagcaagaccatcaaaggttgtatcaaaacatgttaacaagatggcctcttcaag 147  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41900854 tggaaaatgataaagacctcaatgttggtctctggcggagagcagaagcaagaccatcaaaggttgtatcaaaacatgtcaacaagatggcctcttcaag 41900755  T
Q  148 aaacttacaatttttgaacaactggaaaattaatttgtcaacatgataatgaccagaaagattaaccttacggagtttaaaaagtgcaagctcctctagc 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41900754 aaacttacaatttttgaacaactggaaaattaatttgtcaacatgataatgaccagagagattaaccttacggagtttaaaaagtgcaagctcctctagc 41900655  T
Q  248 tcatcataattgcattgtgtggggtatctgaggtcgagaacttccaacaaagggaaacagtcagagata 316  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41900654 tcatcataattgcattgtgtggggtatctgagatcgagaacttccaacaaagggaaacagtcagagata 41900586  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 32268231 - 32268327
Alignment:
Q  48 tggaaaaggataaagacctcaatgttggtctctggcggagagcaaaagcaagaccatcaaaggttgtatcaaaacatgttaacaagatggcctcttc 144  Q
    |||||||||||| ||||||||||||||||||||  ||||| |||  ||||| |||| |||||||| | |||| |||||  |||| ||||||||||||    
T  32268231 tggaaaaggatacagacctcaatgttggtctctcacggagggcattagcaataccaacaaaggttatgtcaacacatggcaacatgatggcctcttc 32268327  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 32268442 - 32268499
Alignment:
Q  259 gcattgtgtggggtatctgaggtcgagaacttccaacaaagggaaacagtcagagata 316  Q
    |||||||||||||||  ||||||| || ||||||||||| |||||||| | |||||||    
T  32268442 gcattgtgtggggtaattgaggtctaggacttccaacaaggggaaacaatgagagata 32268499  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 27922868 - 27922993
Alignment:
Q  48 tggaaaaggataaagacctcaatgttggtctctggcggagagcaaaagcaagaccatcaaaggttgtatcaaaacatgttaacaagatggcctcttcaag 147  Q
    ||||||| |||||||||||||| |||||||||| ||| |||||   |||||  |||||||||||| | ||||||||    |||| ||| |||||||| ||    
T  27922868 tggaaaatgataaagacctcaaggttggtctctcgcgcagagctttagcaattccatcaaaggttatgtcaaaacagtgcaacatgatagcctcttcgag 27922967  T
Q  148 aaacttacaatttttgaacaactgga 173  Q
    || ||||||| |||||||||| ||||    
T  27922968 aaccttacaacttttgaacaaatgga 27922993  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 18315023 - 18314971
Alignment:
Q  46 actggaaaaggataaagacctcaatgttggtctctggcggagagcaaaagcaa 98  Q
    |||||||| ||||||||||||||| ||||||||||  ||||||||||||||||    
T  18315023 actggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaa 18314971  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 14003816 - 14003853
Alignment:
Q  55 ggataaagacctcaatgttggtctctggcggagagcaa 92  Q
    |||||||||  |||||||||||||||||||||||||||    
T  14003816 ggataaagaagtcaatgttggtctctggcggagagcaa 14003853  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 1601177 - 1601225
Alignment:
Q  50 gaaaaggataaagacctcaatgttggtctctggcggagagcaaaagcaa 98  Q
    |||||||||||||||||||||||||||||||  ||||||||| ||||||    
T  1601177 gaaaaggataaagacctcaatgttggtctctcacggagagcagaagcaa 1601225  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 371296 - 371346
Alignment:
Q  48 tggaaaaggataaagacctcaatgttggtctctggcggagagcaaaagcaa 98  Q
    ||||||||||||||||  ||||||||||||||||  |||||||| ||||||    
T  371296 tggaaaaggataaagaggtcaatgttggtctctgaaggagagcagaagcaa 371346  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 7225536 - 7225503
Alignment:
Q  47 ctggaaaaggataaagacctcaatgttggtctct 80  Q
    |||| |||||||||||||||||||||||||||||    
T  7225536 ctggtaaaggataaagacctcaatgttggtctct 7225503  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 53761045 - 53761012
Alignment:
Q  200 ccagaaagattaaccttacggagtttaaaaagtg 233  Q
    |||||||||||||||||||||||||| |||||||    
T  53761045 ccagaaagattaaccttacggagtttgaaaagtg 53761012  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 1755227 - 1755275
Alignment:
Q  50 gaaaaggataaagacctcaatgttggtctctggcggagagcaaaagcaa 98  Q
    |||||||||||| |||||||||||||||||| ||  | |||||||||||    
T  1755227 gaaaaggataaatacctcaatgttggtctctcgcaaatagcaaaagcaa 1755275  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 8183668 - 8183640
Alignment:
Q  52 aaaggataaagacctcaatgttggtctct 80  Q
    |||||||||||||||||||||||||||||    
T  8183668 aaaggataaagacctcaatgttggtctct 8183640  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 21833689 - 21833649
Alignment:
Q  50 gaaaaggataaagacctcaatgttggtctctggcggagagc 90  Q
    |||||||||||||| ||||||||||||||||  ||||||||    
T  21833689 gaaaaggataaagaactcaatgttggtctctcacggagagc 21833649  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 13469903 - 13469868
Alignment:
Q  202 agaaagattaaccttacggagtttaaaaagtgcaag 237  Q
    ||||||||||||||| ||||||||||||||||||||    
T  13469903 agaaagattaaccttgcggagtttaaaaagtgcaag 13469868  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 7554870 - 7554898
Alignment:
Q  52 aaaggataaagacctcaatgttggtctct 80  Q
    |||||||||||||||||||||||||||||    
T  7554870 aaaggataaagacctcaatgttggtctct 7554898  T

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