View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5311_low_36 (Length: 312)
Name: NF5311_low_36
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 78 - 293
Target Start/End: Original strand, 7323544 - 7323759
Alignment:
| Q |
78 |
cccaaattcaacaaaagaacaatagagtggaattaaatagaagcaggaacaaaagtgaatggcatcgctgactttgaatgccgcgagcaacaaaggcagc |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||| ||||||||||| | |
|
|
| T |
7323544 |
cccaaattcaacaaaagaacaatatagtggaattaaatagaagcgggaacaaaagtgaatggcattgttgaatttgaatgccgcgaacaacaaaggcaac |
7323643 |
T |
|
| Q |
178 |
ttaactacaaaacatctaatatctcccaaataagttttttcataggccaaaatcatgtaactaccaccatctacttcctttaatccctaacaaacacctt |
277 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7323644 |
tttactacaaaacatctaatatgtcccaaataagctttttcataagccaaaatcatgtaactaccaccatctacttcctttaatccctaacaaacacctt |
7323743 |
T |
|
| Q |
278 |
ccatctcattgctaaa |
293 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
7323744 |
ctatctcattgctaaa |
7323759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 78 - 293
Target Start/End: Complemental strand, 2503030 - 2502812
Alignment:
| Q |
78 |
cccaaattcaacaaaagaacaatagagtggaattaaatagaagcaggaacaaaagtgaatggcatcgctgactttgaatgccgcgagcaacaaaggcagc |
177 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
2503030 |
cccaaactcaacaaaagaacaatagagtggaattaaatagaagcaggaacaaaaatgaatggcatcgttgaatttgaatgccgcgagcaacaaaggcagc |
2502931 |
T |
|
| Q |
178 |
ttaactac----aaaacatctaatatctcccaaataagttttttcataggccaaaatcatgtaactaccaccatctacttcctttaatccctaacaaaca |
273 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||| || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2502930 |
tttactacaaaaaaaacatctaatatgtcccaaat-agcttttgcataatccaaaatcatgtaactaccaccatctacttcctttaatccctaacaaaca |
2502832 |
T |
|
| Q |
274 |
ccttccatctcattgctaaa |
293 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2502831 |
ccttccatctcattgctaaa |
2502812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 87 - 296
Target Start/End: Original strand, 7318075 - 7318281
Alignment:
| Q |
87 |
aacaaaagaacaatagagtggaattaaatagaagcaggaacaaaagtgaatggcatcgctgactttgaatgccgcgagcaacaaaggcagcttaactaca |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7318075 |
aacaaaagaacaatagagtggaattaaatagaagcaggaacaaaagtgaatggcatcgctgaatttgaatgccgcgagcaacaaaggcagcttaactaca |
7318174 |
T |
|
| Q |
187 |
aaacatctaatatctcccaaataag----ttttttcataggccaaaatcatgtaactaccaccatctacttcctttaatccctaacaaacaccttccatc |
282 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
7318175 |
aaacatctaatatgtcccaaataagttttttttttcataggccaaaatcatgtaactaccaccatctacttccat-------taacaaacacattccatc |
7318267 |
T |
|
| Q |
283 |
tcattgctaaatca |
296 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7318268 |
tcattgctaaatca |
7318281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 78 - 293
Target Start/End: Complemental strand, 2492746 - 2492532
Alignment:
| Q |
78 |
cccaaattcaacaaaagaacaatagagtggaattaaatagaagcaggaacaaaagtgaatggcatcgctgactttgaatgccgcgagcaacaaaggcagc |
177 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
2492746 |
cccaaactcaacaaaagaacaatagagtggaattaaatagaagcaggaacaaaaatgaatggcatcgttgaatttgaatgccgcgagcagcaaaggcagc |
2492647 |
T |
|
| Q |
178 |
ttaactacaaaacatctaatatctcccaaataagttttttcataggccaaaatcatgtaactaccaccatctacttcctttaatccctaacaaacacctt |
277 |
Q |
| |
|
|| ||||||||||||||||||| | |||||| || |||| |||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
2492646 |
tttactacaaaacatctaatatgttccaaat-agcttttgcataagcaaaaatcatgtaactaccaccatcgacttccttaaatccctaacaaacacctt |
2492548 |
T |
|
| Q |
278 |
ccatctcattgctaaa |
293 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2492547 |
ccatctcattgctaaa |
2492532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 78 - 293
Target Start/End: Original strand, 7442190 - 7442403
Alignment:
| Q |
78 |
cccaaattcaacaaaagaacaatagagtggaattaaatagaagcaggaacaaaagtgaatggcatcgctgactttgaatgccgcgagcaacaaaggcagc |
177 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| |||||| | | ||||||||| |||| || || | ||| || ||| || |||||||||| ||||||| |
|
|
| T |
7442190 |
cccaaattcaacaaaagaactatagaatggcattaaaaatgatcaggaacaatggtgagtgaaattgttgaattcgaaagctgcgagcaacataggcagc |
7442289 |
T |
|
| Q |
178 |
ttaactacaaaacatctaatatctcccaaataagttttttcataggccaaaatcatgtaactaccaccatctacttcctttaatccctaacaaacacctt |
277 |
Q |
| |
|
|| ||| ||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||| |||||||||||||| ||||| || || ||||| |
|
|
| T |
7442290 |
ttcactgcaaaacatctaatatgtcccaaataagctttttcataagccaaaatcatgt--ttaccactatctacttcctttagtccctgacgaatacctt |
7442387 |
T |
|
| Q |
278 |
ccatctcattgctaaa |
293 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7442388 |
ccatctcattgctaaa |
7442403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 7310569 - 7310624
Alignment:
| Q |
24 |
tgatgacggatattgtaaaataattttagaccgtcatctaatagcaactattttcc |
79 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7310569 |
tgatgacgtatattgtaaagtaattttagaccgtcatctaatagcaactattttcc |
7310624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 183 - 289
Target Start/End: Original strand, 756983 - 757089
Alignment:
| Q |
183 |
tacaaaacatctaatatctcccaaataagttttttcataggccaaaatcatgtaactaccaccatctacttcctttaatccctaacaaacaccttccatc |
282 |
Q |
| |
|
||||||| |||| |||| | ||||||||| |||||||| |||||||| |||||||| ||||||||||||||| ||||| |||||||| ||| |||| | |
|
|
| T |
756983 |
tacaaaatatctcatatgttccaaataagccttttcataaaccaaaatcttgtaactagcaccatctacttcctctaatcactaacaaataccatccacc |
757082 |
T |
|
| Q |
283 |
tcattgc |
289 |
Q |
| |
|
||||||| |
|
|
| T |
757083 |
tcattgc |
757089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 1370693 - 1370755
Alignment:
| Q |
231 |
catgtaactaccaccatctacttcctttaatccctaacaaacaccttccatctcattgctaaa |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || || || | |||||||||||| |
|
|
| T |
1370693 |
catgtaactaccaccatctacttcctttaatcactaactaatacatttaacctcattgctaaa |
1370755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University