View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_39 (Length: 299)
Name: NF5311_low_39
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_39 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 41078197 - 41078477
Alignment:
| Q |
18 |
atattattattatttgttccaaagatttaattttctgttctcaaaaaatatatttaaagtattatttcctttaatcacgaagnnnnnnnttgttatttgg |
117 |
Q |
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| T |
41078197 |
atattattattatttgttccaaagatttaattttctgttctcaaaaaatatatttaaagtattatttcctttaatcacgcagaaaaaaattgttatttga |
41078296 |
T |
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| Q |
118 |
tcagatcataaagataaaattgtaaattagttttaaaatacctctcttttcatattttgaaccaaacacatttgtaattaaacttttttcattccacttc |
217 |
Q |
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| T |
41078297 |
tcagatcataaagataaaattgtaaattagttttaaaatatctctcttttcatattttgaaccaaacacattt-taattaaacttttttcattccacttc |
41078395 |
T |
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| Q |
218 |
cctctcctcccctatagaccctaaatggaggctaaatagagtgtagtgagtggttcagtttgaagcaaagggtggtggtggt |
299 |
Q |
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| T |
41078396 |
cctctcctcccctatagaccctaaatggaggctaaatagagtgtagtgagtggttcagtttgaagcaaagggtggtggtggt |
41078477 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 50190593 - 50190529
Alignment:
| Q |
30 |
tttgttccaaagatttaattttctgttctcaaaaaatatatttaaagtattatttcctttaatca |
94 |
Q |
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| T |
50190593 |
tttgttctaaagatttaatttgttgctccccaaaaatatttttaacgtattattttctttaatca |
50190529 |
T |
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