View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_4 (Length: 568)
Name: NF5311_low_4
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 25 - 558
Target Start/End: Original strand, 34356655 - 34357188
Alignment:
| Q |
25 |
ccggatatctgcaaaagttgccacatgcagacaatcagaagagaatgtcttgataaatcagaatgatgcattggattttgatgatagcattnnnnnnnng |
124 |
Q |
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| T |
34356655 |
ccggatatctgcaaaagttgccacatgcagacaatcagaagagaatgtcttgataaatcagaatgatgcattggattttgatgatagcattaaaaaaaag |
34356754 |
T |
|
| Q |
125 |
gcacatgaacacaccgctataacttcatcaaggatttctctatccaaattcttgggcacaaaaccagatccaataccatgaattatgtgaggtcctgtga |
224 |
Q |
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| T |
34356755 |
gcacatgaacacaccgctataacttcatcaaggatttttttatccaaattcttgggcacaaaaccagatccaataccatgaattatgtgaggtcctgtga |
34356854 |
T |
|
| Q |
225 |
tttagcaggaaaaaataaatagataattgctctttaaaggaaataacatattagacttggaattgtagaaacttattctatttcttacctggctttccac |
324 |
Q |
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| T |
34356855 |
tttagcaggaaaaaataaatagataattgctctttaaaggaaataacatattagacttggaattgtagaaacttattctatttcttacctggctttccac |
34356954 |
T |
|
| Q |
325 |
ctgaaagtacgttgcattccagaggctctacaccgatacactgattgatacatagagaataaaatggtaaacggaaatcaacaagctaggtagaaagctt |
424 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34356955 |
ctgaaagtacgttgcattcgagaggctctacaccgatacactgattgatacatagagaataaaatgttaaacggaaatcaacaagctaggtagaaagctt |
34357054 |
T |
|
| Q |
425 |
ctcttgagaatgatttacctttatttttggattttgttgttttaggaatctaccagctccagaaagagttccaccagttccaattcccgcgactaaaata |
524 |
Q |
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| T |
34357055 |
ctcttgagaatgatttacctttatttttggattttgttgttttaggaatctaccagctccagaaagagttccaccagttccaattcccacgactaaaata |
34357154 |
T |
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| Q |
525 |
tctacttttccttttgtatctttccatatctctg |
558 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
34357155 |
tctacttttccttttgtatctttccatatctctg |
34357188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 22 - 558
Target Start/End: Original strand, 34351286 - 34351816
Alignment:
| Q |
22 |
tcgccggatatctgcaaaagttgccacatgcagacaatcagaagagaatgtcttgataaatcagaatgatgcattggattttgatgatagcattnnnnnn |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||||||| ||| |
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| T |
34351286 |
tcgccggatatctgcaaaagttgccacatgcagacaatcataagagaatgtcttgattaatcaga-taatgcattggattttgatgatcacat---ataa |
34351381 |
T |
|
| Q |
122 |
nnggcacatgaacacaccgctataacttcatcaaggatttctctatccaaattcttgggcacaaaaccagatccaataccatgaattatgtgaggtcctg |
221 |
Q |
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| T |
34351382 |
atgagacaagaacagaccgctataacttcatcaaggatttctttatccaaattcttgggcacaaaaccagctccaataccctgaattatgtgcggtcctg |
34351481 |
T |
|
| Q |
222 |
tgatttagcaggaaaaaataaatagataattgctctttaaaggaaataacatattagacttggaattgtagaaacttattctatttcttacctggctttc |
321 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
34351482 |
tgatttagcaggaaaaaataaatagataaaagctctttaaaagaaataacataatagacttggaattgtagaaacttattttatttcttacgtggctttc |
34351581 |
T |
|
| Q |
322 |
cacctgaaagtacgttgcattccagaggctctacaccgatacactgattgatacatagagaataaaatggtaaacggaaatcaacaagctaggtagaaag |
421 |
Q |
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| |||||||||| ||||| ||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||||| |||| |
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| T |
34351582 |
ctcctgaaagtatgttgctttcgagaggctctacaccgatacactaattgatacagagagaataaaatgttaaatggaaatcaacaagctaggt--aaag |
34351679 |
T |
|
| Q |
422 |
cttctcttgagaatgatttacctttatttttggattttgttgttttaggaatctaccagctccagaaagagttccaccagttccaattcccgcgactaaa |
521 |
Q |
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| T |
34351680 |
cttctcttgagaatgatttacctttatttttggattttgttgttttaggaatctaccagctccagaaagagttccaccagttccaattcccgcgactaaa |
34351779 |
T |
|
| Q |
522 |
atatctacttttccttttgtatctttccatatctctg |
558 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
34351780 |
atatctacttttccttttgtatctttccatatctctg |
34351816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 125 - 358
Target Start/End: Original strand, 34365903 - 34366138
Alignment:
| Q |
125 |
gcacatgaacacaccgctataacttcatcaaggatttctctatccaaattcttgggcacaaaaccagatccaataccatgaattatgtgaggtcctgtga |
224 |
Q |
| |
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||||| ||||| |||||||||||||||||||| | |||| |||||||||| ||||||||||||||| |||||||| |||||| |||||||||||||| |
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| T |
34365903 |
gcacaagaacagaccgctataacttcatcaagcacttcttcatccaaattcctgggcacaaaaccagccccaataccctgaattttgtgaggtcctgtgg |
34366002 |
T |
|
| Q |
225 |
tttagcaggaaaaaataaatagataattgctctt-------taaaggaaataacatattagacttggaattgtagaaacttattctatttcttacctggc |
317 |
Q |
| |
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|||||||| ||||| |||||||||| |||||| || | || || ||||| |||||||| || ||||||||| ||||||||||||||| |
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| T |
34366003 |
tttagcagaaaaaaggaaatagataaaagctcttttgaaaatataaaaattatgatattggacttggattt---gaaacttat--tatttcttacctggc |
34366097 |
T |
|
| Q |
318 |
tttccacctgaaagtacgttgcattccagaggctctacacc |
358 |
Q |
| |
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|||||||||||||||| ||||| ||| |||||||||||||| |
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| T |
34366098 |
tttccacctgaaagtatgttgctttcgagaggctctacacc |
34366138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 428 - 558
Target Start/End: Original strand, 34366334 - 34366464
Alignment:
| Q |
428 |
ttgagaatgatttacctttatttttggattttgttgttttaggaatctaccagctccagaaagagttccaccagttccaattcccgcgactaaaatatct |
527 |
Q |
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||||||||||||||||| || ||||| |||||||||||||||||||| ||| | |||||||| ||||||||||||||||| || || |||||||||||| |
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| T |
34366334 |
ttgagaatgatttacctgtacttttgaattttgttgttttaggaatcgaccggttccagaaatggttccaccagttccaatccctgcaactaaaatatct |
34366433 |
T |
|
| Q |
528 |
acttttccttttgtatctttccatatctctg |
558 |
Q |
| |
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| ||| ||| ||||||||| ||||||||||| |
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| T |
34366434 |
attttgcctcttgtatcttcccatatctctg |
34366464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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