View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_40 (Length: 289)
Name: NF5311_low_40
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 29613333 - 29613100
Alignment:
| Q |
18 |
tctctatgataatggagagagaaaatggagaagatcctaattcttcgagcaaagctatatggtttccaattttatattaattatttctttctcctcggaa |
117 |
Q |
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| T |
29613333 |
tctctatgataatggagagagaaaatggagaagatcctaattcttcgagcaaagctatatggtttccaattttatattaattatttctttctcctcg-aa |
29613235 |
T |
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| Q |
118 |
ttcgaacacaaaaatgtgtattttaccctgttaaattatgtccaaataccagtcttgctatttccattgtccatatatatatggattaaacaatccccta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
29613234 |
ttcgaacacaaaaatgtgtattttaccctgttaaattatgcccaaataccagtcttgttatttccattgtccatatatatatggattaaacaatccctta |
29613135 |
T |
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| Q |
218 |
caatgctacaacacttatagaatttgtttcatgta |
252 |
Q |
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| T |
29613134 |
caatgctacaacacttatagaatttgtttcatgta |
29613100 |
T |
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