View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_44 (Length: 281)
Name: NF5311_low_44
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 46843395 - 46843123
Alignment:
| Q |
1 |
cattacgatttaattaatttggatttttgtgctttttagagaatgaagaatcgttgagacttttgttaaaggatacggcattggaattcgaatggcctat |
100 |
Q |
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| T |
46843395 |
cattacgatttaattaatttggatttt-gtgctttttagagaatgaagaatcgttgagacttttgttaaaggatacggcattggaattcgaatggcctat |
46843297 |
T |
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| Q |
101 |
aagtagaataagagaagcttttcctgaatctgtttctttgttatcttcaactcctaattcatgttctgttgagtgtgctaaatcaattgcttc-ttagtt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46843296 |
aagtagaataagagaagcttttcctgaatctgtttctttgttatcttcaactcctaattcatgttctgttgagtgtgctaaatcaattgcttctttagtt |
46843197 |
T |
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| Q |
200 |
gaagagcttaatatacctgaagctaaaattggacttgcttctggtgttgccgcttttctttggttatattcttc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46843196 |
gaagagcttaatatacctgaagctaaaattggacttgcttctggtgttgccgcttttctttggttatattcttc |
46843123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 127 - 273
Target Start/End: Complemental strand, 11349407 - 11349260
Alignment:
| Q |
127 |
aatctgtttctttgttatcttcaactcctaattcatgttctgttgagtgtgctaaatcaattgcttctt-agttgaagagcttaatatacctgaagctaa |
225 |
Q |
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||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| || ||||| |
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| T |
11349407 |
aatctgtttcttttttatcttcaactcctagttcatgttctattgagtgtgctaaatcaattgcggctttagttgaagagcttaatataccagaggctaa |
11349308 |
T |
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| Q |
226 |
aattggacttgcttctggtgttgccgcttttctttggttatattcttc |
273 |
Q |
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||||| |||||| | |||||||||||||||||||| |||||||||||| |
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| T |
11349307 |
aattgaacttgcatttggtgttgccgcttttctttagttatattcttc |
11349260 |
T |
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