View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_49 (Length: 258)
Name: NF5311_low_49
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 41245726 - 41245974
Alignment:
| Q |
1 |
aatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaattaagcgtgttgtttcgatcat |
100 |
Q |
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| T |
41245726 |
aatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaattaagcgtgttgtttcgatcat |
41245825 |
T |
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| Q |
101 |
cgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctctctaccatagcaggttcatcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41245826 |
cgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctctctaccatagcaggttcatcaca |
41245925 |
T |
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| Q |
201 |
gaagtttcttagcttcacttggttccatgctacctcaattccttcttct |
249 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41245926 |
gaagtttcttagcttcacttggttccatgctacctctattccttcttct |
41245974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 22263770 - 22264006
Alignment:
| Q |
12 |
agaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaattaagcgtgttgtttcgatcatcgctccaaaca |
111 |
Q |
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| T |
22263770 |
agaaacatgtttatgtttcttcctatactccctcaaattcccacttgtacaaacctcagtgatgaaattcagtgtgttatgctccttatccctccaaaca |
22263869 |
T |
|
| Q |
112 |
ctataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctctctaccatagcaggttcatcacagaagtttctta |
211 |
Q |
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| T |
22263870 |
ttgtaaagtgcaatgatgtttttgtttgtcatgtttttaagaagtctcacttcagagtaaagtctttcaatcattgcagggtcattgctgaaatttctga |
22263969 |
T |
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| Q |
212 |
gcttcacttggttccatgctacctcaattccttcttc |
248 |
Q |
| |
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| T |
22263970 |
gcttaacttgattccatgctacttctattccttcttc |
22264006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 22270070 - 22269834
Alignment:
| Q |
12 |
agaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaattaagcgtgttgtttcgatcatcgctccaaaca |
111 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||| | | ||| ||||||||| |
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| T |
22270070 |
agaaacatgtttatgtttcttcctatactccctcaaattcccacttgtacaaacctcagtgatgaaattcagtgtgttatgctccttatccctccaaaca |
22269971 |
T |
|
| Q |
112 |
ctataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctctctaccatagcaggttcatcacagaagtttctta |
211 |
Q |
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| T |
22269970 |
ttgtaaagtgcaatgatgtttttgtttgtcatgtttttaagaagtctcacttcagagtaaagtctttcaatcattgcagggtcattgctgaaatttctga |
22269871 |
T |
|
| Q |
212 |
gcttcacttggttccatgctacctcaattccttcttc |
248 |
Q |
| |
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|||| ||||| ||||||||||| || ||||||||||| |
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| T |
22269870 |
gcttaacttgattccatgctacttctattccttcttc |
22269834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 45874331 - 45874503
Alignment:
| Q |
4 |
gccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaattaagcgtgttgtttcgatcatcgc |
103 |
Q |
| |
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||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||| |||| | ||||| | |
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| T |
45874331 |
gccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtgatgaaattaagtatgttatgatcttcatctc |
45874430 |
T |
|
| Q |
104 |
tccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcct |
176 |
Q |
| |
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|||||||| ||||| |||||||||||| |||| ||| |||||| | || || |||||||| |||||||| |
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| T |
45874431 |
tccaaacatagtaaagggcaatgatgttttcgtttctcatgcttctaagcaatctaacttcagagtaaagcct |
45874503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 10082972 - 10083209
Alignment:
| Q |
12 |
agaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaattaagcgtgttgtttcgatcatcgctccaaaca |
111 |
Q |
| |
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||||||||| |||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| || || || | |||||| ||||||||| |
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| T |
10082972 |
agaaacatgcttatgtttcttcctatattccctcaaattcccacttgtacaaacctcagtgatgaaattcagtgtattatgatcatcatccctccaaaca |
10083071 |
T |
|
| Q |
112 |
ctataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctctctaccatagcaggttcatcacagaagtttctta |
211 |
Q |
| |
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|||||||| ||||||||||| |||| |||| |||||| | ||| ||||||||||| ||||| || || | ||| ||||| |||| | ||| || | | |
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| T |
10083072 |
ttataaagtgcaatgatgtttctgttcgtcatgcttctaagtaatctcacttcagagtaaagtctatcaatcattgcagggtcattgctgaaattccgaa |
10083171 |
T |
|
| Q |
212 |
gcttcacttggttccatgctacctcaattccttcttct |
249 |
Q |
| |
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|||| ||||| ||||| ||||| || |||||||||||| |
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| T |
10083172 |
gcttaacttgattccaagctacttctattccttcttct |
10083209 |
T |
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