View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_57 (Length: 249)
Name: NF5311_low_57
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 39627659 - 39627887
Alignment:
| Q |
1 |
taatttctgtttttcatgttatcctaaagttaggtctgttagtatttgttctgctcatggaggagattcattcagtattgatttatttaaccaacaacag |
100 |
Q |
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| T |
39627659 |
taatttctgtttttcatgttatcctaaagttaggtctgttagtatttgttctgctcatggaggagattcattcagtattgatttatttaaccaccaacag |
39627758 |
T |
|
| Q |
101 |
tgtggaaatatagctagaagttttttcttctgttagaccaatgttagtgtttatgtaagttcctaacattctatcttttggcctctaacttaagactctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39627759 |
tgtggaaatatagctagaagttttttcttctgttagaccaatgttagtgtttatgtaagttcctaacattctatcttttggcctctaacttaagactctt |
39627858 |
T |
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| Q |
201 |
ttggtgccggtagctcatcaaccaagctg |
229 |
Q |
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| T |
39627859 |
ttggtgccggtagctcatcaaccaagctg |
39627887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 39616959 - 39617123
Alignment:
| Q |
5 |
ttctgtttttcatgttatcctaaagttaggtctgttagtatttgttctgctcatggaggagattcattcagtattgatttatttaaccaacaacagtgtg |
104 |
Q |
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||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
39616959 |
ttctgtttttcatgttaccctaaagtcaggtctgttggtatttgttctgctcatggaggagattc----agtattgatttatttaaccaccaacagtgtg |
39617054 |
T |
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| Q |
105 |
gaaatatagctagaagttttttcttctgttagaccaatgttagtgtttatgtaagttcctaacattcta |
173 |
Q |
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| T |
39617055 |
gaaatataactagaagttttttcttctgttagactgatgttagtatttatgtaagttcctaacgttcta |
39617123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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