View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5311_low_59 (Length: 245)

Name: NF5311_low_59
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5311_low_59
NF5311_low_59
[»] chr7 (7 HSPs)
chr7 (1-228)||(11268615-11268842)
chr7 (1-223)||(11281362-11281577)
chr7 (1-163)||(11242527-11242689)
chr7 (72-219)||(6847642-6847787)
chr7 (74-194)||(1941532-1941647)
chr7 (165-223)||(14925740-14925798)
chr7 (165-223)||(15349206-15349264)
[»] chr8 (1 HSPs)
chr8 (72-221)||(9798286-9798431)
[»] chr3 (2 HSPs)
chr3 (72-221)||(13832906-13833058)
chr3 (112-219)||(16998974-16999080)
[»] chr4 (6 HSPs)
chr4 (83-223)||(21276770-21276905)
chr4 (85-226)||(17464989-17465125)
chr4 (72-194)||(15048092-15048209)
chr4 (72-194)||(15106215-15106332)
chr4 (163-223)||(55267803-55267863)
chr4 (163-223)||(24493167-24493227)
[»] chr2 (4 HSPs)
chr2 (83-223)||(21511742-21511877)
chr2 (72-194)||(23482639-23482756)
chr2 (83-207)||(21516237-21516356)
chr2 (163-223)||(25592927-25592987)
[»] chr1 (7 HSPs)
chr1 (112-223)||(12727008-12727119)
chr1 (112-222)||(27318754-27318864)
chr1 (72-223)||(8236384-8236531)
chr1 (6-71)||(12727187-12727257)
chr1 (163-223)||(15421321-15421381)
chr1 (163-223)||(16527458-16527518)
chr1 (72-143)||(17734982-17735049)
[»] chr5 (3 HSPs)
chr5 (112-227)||(42687477-42687593)
chr5 (112-185)||(20055288-20055360)
chr5 (163-223)||(19222135-19222195)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 11268842 - 11268615
Alignment:
Q  1 tttatgcaatttatcttcagcaatttacattcagtcataattatgcaatttatttctatgcctttttacttagtagactttctagtcttgggaatgttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11268842 tttatgcaatttatcttcagcaatttacattcagtcataattatgcaatttatttctatgcctttttacttagtagactttctagtcttgggaatgttgg 11268743  T
Q  101 aatagtctaattaatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttctaatttaatctcattgtttttaatctcag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  11268742 aatagtctaattaatgacttaattctattcaaaccaagtctagatatctatgttgtttaaattctattttctaatttaatctcattgtttttaatctgag 11268643  T
Q  201 taacaagaattaaatgaaggaccaaact 228  Q
    ||||||||||||||||||||||||||||    
T  11268642 taacaagaattaaatgaaggaccaaact 11268615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11281362 - 11281577
Alignment:
Q  1 tttatgcaatttatcttcagcaatttacattcagtcataattatgcaatttatttctatgcctttttacttagtagactttctagtcttgggaatgttgg 100  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11281362 tttacgcaatttatcttcaacaatttacattcagtcataattatgcaatttatttctatgcctttttacttagtagactttctagtcttgggaatgttgg 11281461  T
Q  101 aatagtctaattaatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttctaatttaatctcattgtttttaatctcag 200  Q
    |||        |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  11281462 aatc-------taatgacttaattctattcaaaccaagtctagatatctattttgtttaaattctattttctaatttaatctcattgtttttaatctcag 11281554  T
Q  201 taacaagaattaaatgaaggacc 223  Q
    |||||||||||||||||||||||    
T  11281555 taacaagaattaaatgaaggacc 11281577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 11242527 - 11242689
Alignment:
Q  1 tttatgcaatttatcttcagcaatttacattcagtcat----aattatgcaatttatttctatgcctttttacttagtagactttctagtcttgggaatg 96  Q
    ||||||||||||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| ||    
T  11242527 tttatgcaatttatcttcagcaatttacattcagtcatttacaattatacaatttatttctatgcctttttacttagtagaccttctagtattgggattg 11242626  T
Q  97 ttggaatagtctaattaatgacttaattctattcaaaccaagtctagatatctatgttctttaaatt 163  Q
    |||||||||||    |||||||||||| ||||||||||||||| ||||||||| | || ||||||||    
T  11242627 ttggaatagtc----taatgacttaatcctattcaaaccaagtttagatatcttttttgtttaaatt 11242689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 6847787 - 6847642
Alignment:
Q  72 agtagactttctagtcttgggaatgttggaatagtctaattaatgacttaatt--ctattcaaaccaagtctagatatctatgttctttaaattctattt 169  Q
    ||||||| | ||||| |||||| |||||||||||||||||    ||||||||   |||||||||||||||||| |||||||| || |||| |||||||||    
T  6847787 agtagacctcctagttttgggattgttggaatagtctaat----gacttaatatcctattcaaaccaagtctatatatctattttgtttacattctattt 6847692  T
Q  170 tctaatttaatctcattgtttttaatctcagtaacaagaattaaatgaag 219  Q
    |||||| |||||||||||||||||| |||||||||||| |||||||||||    
T  6847691 tctaatctaatctcattgtttttaaactcagtaacaagtattaaatgaag 6847642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 1941647 - 1941532
Alignment:
Q  74 tagactttctagtcttgggaatgttggaatagtctaattaatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttcta 173  Q
    |||| ||||||||||||||| ||||||||||||    ||||||||| ||||||||||||||||||| ||||  | ||| || |||||||||| |||||||    
T  1941647 tagaatttctagtcttgggattgttggaatagt----ttaatgactgaattctattcaaaccaagtttagaactttattttatttaaattct-ttttcta 1941553  T
Q  174 atttaatctcattgtttttaa 194  Q
    || |||||| |||||||||||    
T  1941552 atataatctgattgtttttaa 1941532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 14925740 - 14925798
Alignment:
Q  165 tattttctaatttaatctcattgtttttaatctcagtaacaagaattaaatgaaggacc 223  Q
    ||||||||||| |||| |||||||||| || |||||||||||| |||||| ||||||||    
T  14925740 tattttctaatctaatttcattgttttcaaactcagtaacaagtattaaacgaaggacc 14925798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 15349206 - 15349264
Alignment:
Q  165 tattttctaatttaatctcattgtttttaatctcagtaacaagaattaaatgaaggacc 223  Q
    ||||||||||| |||| |||||||||| || |||||||||||| |||||| ||||||||    
T  15349206 tattttctaatctaatttcattgttttcaaactcagtaacaagtattaaacgaaggacc 15349264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 9798431 - 9798286
Alignment:
Q  72 agtagactttctagtcttgggaatgttggaatagtctaattaatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttc 171  Q
    ||||||| |||||||||||||| ||| |||||||||||||    |||||||| ||||||| | ||||||||||||||||| || ||||| ||||||||||    
T  9798431 agtagaccttctagtcttgggattgtcggaatagtctaat----gacttaatcctattcagatcaagtctagatatctattttgtttaatttctattttc 9798336  T
Q  172 taatttaatctcattgtttttaatctcagtaacaagaattaaatgaagga 221  Q
    |||| |||||||||||||||||| |||||||||||| |||||| ||||||    
T  9798335 taatctaatctcattgtttttaaactcagtaacaagtattaaacgaagga 9798286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 13833058 - 13832906
Alignment:
Q  72 agtagactttctagtcttgggaatgttggaatagtctaat---taatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctatt 168  Q
    ||||||| || |||| ||| || |||||||||||||||||   |||||||||||| |||||||||||||||||| |||||||| || ||||| |||| ||    
T  13833058 agtagaccttttagttttgtgattgttggaatagtctaatctctaatgacttaatcctattcaaaccaagtctaaatatctattttgtttaagttctgtt 13832959  T
Q  169 ttctaatttaatctcattgtttttaatctcagtaacaagaattaaatgaagga 221  Q
    ||||||| |||||| || ||||| || |||||||||||| | |||||||||||    
T  13832958 ttctaatataatcttatcgttttcaaactcagtaacaagcaataaatgaagga 13832906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 16999080 - 16998974
Alignment:
Q  112 taatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttctaatttaatctcattgtttttaatctcagtaacaagaatt 211  Q
    |||||||| ||| ||||||||||||||| |||||| |||| || ||||||||| |||||||||| |||||||| |  |||||| |||| ||||||| |||    
T  16999080 taatgactgaatcctattcaaaccaagtatagatacctattttatttaaattcaattttctaatctaatctca-tcattttaaactcaataacaagtatt 16998982  T
Q  212 aaatgaag 219  Q
    ||| ||||    
T  16998981 aaacgaag 16998974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 21276770 - 21276905
Alignment:
Q  83 tagtcttgggaatgttggaatagtctaattaatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttctaatttaatct 182  Q
    ||||||||||| |||||||||||||||||    |||||||| |||||||||||||||||| |||||||| || ||||| |||||||||||||| |||  |    
T  21276770 tagtcttgggattgttggaatagtctaat----gacttaatcctattcaaaccaagtctaaatatctat-ttgtttaacttctattttctaatctaaatt 21276864  T
Q  183 cattgtttttaatctcagtaacaagaattaaatgaaggacc 223  Q
    ||| ||||| || |||| ||||||| |||||| ||||||||    
T  21276865 catcgttttcaaactcaataacaagtattaaacgaaggacc 21276905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 226
Target Start/End: Original strand, 17464989 - 17465125
Alignment:
Q  85 gtcttgggaatgttggaatagtctaattaatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttctaatttaatctca 184  Q
    ||||||||| |||||||||||||||||    ||||||||  ||||||||||||||||| |||||||| || ||||| |||||||||||||| |||| |||    
T  17464989 gtcttgggattgttggaatagtctaat----gacttaatcttattcaaaccaagtctaaatatctat-ttgtttaacttctattttctaatctaatttca 17465083  T
Q  185 ttgtttttaatctcagtaacaagaattaaatgaaggaccaaa 226  Q
    | ||||| || |||| ||||||| ||| || |||| ||||||    
T  17465084 tcgttttcaaactcaataacaagtatttaacgaagtaccaaa 17465125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 194
Target Start/End: Complemental strand, 15048209 - 15048092
Alignment:
Q  72 agtagactttctagtcttgggaatgttggaatagtctaattaatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttc 171  Q
    |||| ||||||||||||||||| |||||||||||||    |||||||| ||| ||||||||||||||||||||    ||| || |||||||||| |||||    
T  15048209 agtatactttctagtcttgggattgttggaatagtc----taatgactaaatcctattcaaaccaagtctagaaccttattttatttaaattct-ttttc 15048115  T
Q  172 taatttaatctcattgtttttaa 194  Q
    |||| |||||||||  |||||||    
T  15048114 taatctaatctcataatttttaa 15048092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 194
Target Start/End: Original strand, 15106215 - 15106332
Alignment:
Q  72 agtagactttctagtcttgggaatgttggaatagtctaattaatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttc 171  Q
    |||| ||||||||||||||||| |||||||||||||    |||||||| ||| ||||||||||||||||||||    ||| || |||||||||| |||||    
T  15106215 agtatactttctagtcttgggattgttggaatagtc----taatgactaaatcctattcaaaccaagtctagaaccttattttatttaaattct-ttttc 15106309  T
Q  172 taatttaatctcattgtttttaa 194  Q
    |||| |||||||||  |||||||    
T  15106310 taatctaatctcataatttttaa 15106332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 55267803 - 55267863
Alignment:
Q  163 tctattttctaatttaatctcattgtttttaatctcagtaacaagaattaaatgaaggacc 223  Q
    ||||||||||||| |||| |||| ||||| || |||||||||||| |||||| ||||||||    
T  55267803 tctattttctaatctaatttcatcgttttcaaactcagtaacaagtattaaacgaaggacc 55267863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 24493167 - 24493227
Alignment:
Q  163 tctattttctaatttaatctcattgtttttaatctcagtaacaagaattaaatgaaggacc 223  Q
    ||||||||||||| |||| |||||||||| ||  ||| ||||||| |||||| ||||||||    
T  24493167 tctattttctaatctaatttcattgttttcaaattcaataacaagtattaaacgaaggacc 24493227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 21511877 - 21511742
Alignment:
Q  83 tagtcttgggaatgttggaatagtctaattaatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttctaatttaatct 182  Q
    ||||||||||| |||||||||||||||||    |||||||| |||||||||||||||||| |||||||| || ||||| |||||||||||||| |||| |    
T  21511877 tagtcttgggattgttggaatagtctaat----gacttaatcctattcaaaccaagtctaaatatctat-ttgtttaacttctattttctaatctaattt 21511783  T
Q  183 cattgtttttaatctcagtaacaagaattaaatgaaggacc 223  Q
    ||| ||||| || |||| |||||||  ||||| ||||||||    
T  21511782 catcgttttcaaactcaataacaagtgttaaacgaaggacc 21511742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 194
Target Start/End: Original strand, 23482639 - 23482756
Alignment:
Q  72 agtagactttctagtcttgggaatgttggaatagtctaattaatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttc 171  Q
    ||||||||||||| |||||||| ||| |||||||||    |||||||| |||||||||||||||||||||| | |  ||| || |||||||||| |||||    
T  23482639 agtagactttctactcttgggattgtgggaatagtc----taatgactaaattctattcaaaccaagtctacaaaattattttgtttaaattct-ttttc 23482733  T
Q  172 taatttaatctcattgtttttaa 194  Q
    |||| |||| ||||  |||||||    
T  23482734 taatataatatcatcatttttaa 23482756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 21516356 - 21516237
Alignment:
Q  83 tagtcttgggaatgttggaatagtctaattaatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttctaatttaatct 182  Q
    |||| |||||| |||||||||||||||||    |||||||| ||||| |||  ||||||| ||| ||||||  ||||| |||||||||||||| |||| |    
T  21516356 tagtgttgggattgttggaatagtctaat----gacttaatcctatttaaaggaagtctaaatagctatgtg-tttaacttctattttctaatctaattt 21516262  T
Q  183 cattgtttttaatctcagtaacaag 207  Q
    ||| ||||| || ||||||||||||    
T  21516261 catcgttttgaaactcagtaacaag 21516237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 25592987 - 25592927
Alignment:
Q  163 tctattttctaatttaatctcattgtttttaatctcagtaacaagaattaaatgaaggacc 223  Q
    ||||||||||||| |||| |||||||||| || |||||||||| |  ||||| ||||||||    
T  25592987 tctattttctaatctaatttcattgttttcaaactcagtaacatgtgttaaacgaaggacc 25592927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 12727119 - 12727008
Alignment:
Q  112 taatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttctaatttaatctcattgtttttaatctcagtaacaagaatt 211  Q
    |||||||||||| |||||||||  |||||||||||||||| ||  ||||||||||||||||||| |||||| ||||||||||| | |||||||||| |||    
T  12727119 taatgacttaatcctattcaaattaagtctagatatctattttggttaaattctattttctaatctaatcttattgtttttaaacccagtaacaagtatt 12727020  T
Q  212 aaatgaaggacc 223  Q
    ||| ||| ||||    
T  12727019 aaacgaaagacc 12727008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 27318754 - 27318864
Alignment:
Q  112 taatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttctaatttaatctcattgtttttaatctcagtaacaagaatt 211  Q
    |||||||||||| ||||||||||||||| ||||||| ||| || |||||| | | ||| ||||| |||||| ||||||||||| |||  ||||||| ||     
T  27318754 taatgacttaatcctattcaaaccaagtttagatatatattttgtttaaactttgtttactaatctaatcttattgtttttaaactcgataacaagtatg 27318853  T
Q  212 aaatgaaggac 222  Q
    ||| |||||||    
T  27318854 aaacgaaggac 27318864  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 8236384 - 8236531
Alignment:
Q  72 agtagactttctagtctt-gggaatgttggaatagtctaattaatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctatttt 170  Q
    ||||||| || ||||||| |||| |||||||||||||||||    ||||||||  ||||||||||||||||| |||| |||  | ||||| |||||||||    
T  8236384 agtagaccttttagtctttgggattgttggaatagtctaat----gacttaatcttattcaaaccaagtctaaatatttat-atgtttaacttctatttt 8236478  T
Q  171 ctaatttaatctcattgtttttaatctcagtaacaagaattaaatgaaggacc 223  Q
    ||||| |||| ||||| |||| || |||| ||||||  |||||| ||| ||||    
T  8236479 ctaatataatttcattattttcaaactcaataacaaatattaaacgaatgacc 8236531  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 12727257 - 12727187
Alignment:
Q  6 gcaatttatcttc-agcaatttacattcagtcat----aattatgcaatttatttctatgcctttttactt 71  Q
    ||||||||||||| | ||||||||||||||||||    |||||| ||||||||||||||||||||||||||    
T  12727257 gcaatttatcttccaccaatttacattcagtcatttacaattatacaatttatttctatgcctttttactt 12727187  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 15421321 - 15421381
Alignment:
Q  163 tctattttctaatttaatctcattgtttttaatctcagtaacaagaattaaatgaaggacc 223  Q
    ||||||||||||| |||| |||| ||||| || |||||||||||| |||||| ||||||||    
T  15421321 tctattttctaatctaatttcatcgttttcaaactcagtaacaagtattaaacgaaggacc 15421381  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 16527518 - 16527458
Alignment:
Q  163 tctattttctaatttaatctcattgtttttaatctcagtaacaagaattaaatgaaggacc 223  Q
    ||||||||||||| |||| |||||||||| || |||| ||||||| |||||| ||||||||    
T  16527518 tctattttctaatctaatttcattgttttcaaactcaataacaagtattaaacgaaggacc 16527458  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 17735049 - 17734982
Alignment:
Q  72 agtagactttctagtcttgggaatgttggaatagtctaattaatgacttaattctattcaaaccaagtctag 143  Q
    ||||||| |||||||||| ||| ||||| |||||||||||    |||| ||| |||||||||||||||||||    
T  17735049 agtagacgttctagtcttaggattgttgaaatagtctaat----gactaaatcctattcaaaccaagtctag 17734982  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 227
Target Start/End: Complemental strand, 42687593 - 42687477
Alignment:
Q  112 taatgacttaattctattcaaaccaagtctagatatctatgttctttaaattcta--ttttctaatttaatctcattgtttttaatctcagtaacaagaa 209  Q
    |||||| | ||| ||||||||||||||||||||||||||| || |||||||||||  ||||||||| || |||||| | |||||| |||||||||| | |    
T  42687593 taatgattaaatcctattcaaaccaagtctagatatctattttatttaaattctattttttctaatctattctcatcg-ttttaaactcagtaacacgta 42687495  T
Q  210 ttaaatgaaggaccaaac 227  Q
    ||||| |||  |||||||    
T  42687494 ttaaacgaaataccaaac 42687477  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 20055288 - 20055360
Alignment:
Q  112 taatgacttaattctattcaaaccaagtctagatatctatgttctttaaattctattttctaatttaatctcat 185  Q
    ||||| |||||| ||||||||||||||| || |||||||| || ||||| |||||||||||||| |||| ||||    
T  20055288 taatggcttaatcctattcaaaccaagtataaatatctat-ttgtttaacttctattttctaatctaatttcat 20055360  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 19222135 - 19222195
Alignment:
Q  163 tctattttctaatttaatctcattgtttttaatctcagtaacaagaattaaatgaaggacc 223  Q
    ||||||||||||| ||||  ||||||||| || ||| |||||||| |||||| ||||||||    
T  19222135 tctattttctaatctaattccattgttttcaaactcggtaacaagtattaaacgaaggacc 19222195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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