View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_60 (Length: 240)
Name: NF5311_low_60
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 48452629 - 48452408
Alignment:
| Q |
1 |
actgagttattttttatgtctggtagcatttgtgatatgatttgaaaatgtgattaaattttttaatacaaatatttctccaatgtccaaatagatgcat |
100 |
Q |
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| T |
48452629 |
actgagttcttttttatgtctggtagcatttgtgatatgaattgaaaatgtgattaaattttttaatacaaatatttctccaatgtccaaatagatgcat |
48452530 |
T |
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| Q |
101 |
cttgaattccaatcgtataacaatcaaagcaaaacttgtattcctagataagaaatttaaaagagccaatatcacatgtttcatatgtaggcattaaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48452529 |
cttgaattccaatcgtataacaatcaaagcaaaacttgtattcctagataagaaatttacaagagccaatatcacatgtttcatatgtaggcattaaaaa |
48452430 |
T |
|
| Q |
201 |
taggaagacaattggcatgaac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
48452429 |
taggaagacaattggcatgaac |
48452408 |
T |
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