View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5311_low_65 (Length: 238)
Name: NF5311_low_65
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_65 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9841553 - 9841332
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9841553 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacatttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
9841454 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||||||| |
|
|
| T |
9841453 |
ataattcaattgaatcatgggattcgattataagtgattcgaggctcgacgacagaggtgaagacctttctgaaatataaatggaatctagactcctaca |
9841354 |
T |
|
| Q |
201 |
atcatgtatgataagtgtttgg |
222 |
Q |
| |
|
|||| ||||| ||||||||||| |
|
|
| T |
9841353 |
atcaagtatggtaagtgtttgg |
9841332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 10034698 - 10034497
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10034698 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
10034599 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||| |
|
|
| T |
10034598 |
ataattcaattgaatcatgggattcgatatgaagtgattcgaggctcgacgaccgaggtgaagacctttctgaaatataaatggaaaccagactcctaca |
10034499 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
10034498 |
at |
10034497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10129617 - 10129399
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10129617 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtcaatcttaagcttgacttcaa |
10129518 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
10129517 |
ataattcaattgaatcatgggatatgatataaagtgatttgagg---gacgaccgaggtgaagacctttctgaaatataaatggaatccagactcctaca |
10129421 |
T |
|
| Q |
201 |
atcatgtatgataagtgtttgg |
222 |
Q |
| |
|
|| ||||||| ||||||||||| |
|
|
| T |
10129420 |
attatgtatggtaagtgtttgg |
10129399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10520180 - 10519959
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10520180 |
ttgggaggtagacaaactccttcacaaaatgacaactctacacaatctagagtcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
10520081 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| || |
|
|
| T |
10520080 |
ataattcaattgaatcaggggatatgatctcaagtgattcgaggctcgacgaccgaggtgaagacctttctgaaatataaatggaatccagactcctgca |
10519981 |
T |
|
| Q |
201 |
atcatgtatgataagtgtttgg |
222 |
Q |
| |
|
||| |||| ||||||||||| |
|
|
| T |
10519980 |
ctcacatatggtaagtgtttgg |
10519959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 10373220 - 10373437
Alignment:
| Q |
5 |
gaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaaataa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10373220 |
gaggtagacaaactccttcacaaaatgacaactctcgacatcccaaactcaacctttcaagagcggtgagcatgtccatcttaagcttgacttcaaataa |
10373319 |
T |
|
| Q |
105 |
ttcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctacaatca |
204 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10373320 |
ttcaattgaagcatgggagaagatctgaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagattcctacaattc |
10373419 |
T |
|
| Q |
205 |
tgtatgataagtgtttgg |
222 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
10373420 |
agtatcataagtgtttgg |
10373437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 10666161 - 10665960
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10666161 |
ttgggaggtagacaaactccttcacaaaatgacaactgtgcacatcttagaatcaacttttcaagagcagtgagcatgtccatcttaagcttgacttcaa |
10666062 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||| ||||||||| || ||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
10666061 |
ataattcaattgaatcatgggatctgatcacaagttcttcgagtctcgacgactgacatgaaggactttctaaaatacaaatggaaaccagactcctaca |
10665962 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
10665961 |
at |
10665960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10263396 - 10263175
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
10263396 |
ttgggaggtagacaaactccttcagaaaatgacaactctgcacatgttagaaacaacctttcaagagcggtgagcatttccatcttaagcttgacttcaa |
10263297 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
10263296 |
ataattcaattgaatcatgggatttgatagtaagtgattcgaggctcgacgaccgaggtgaagacctttctaaaatataaatggaatccagacttctaca |
10263197 |
T |
|
| Q |
201 |
atcatgtatgataagtgtttgg |
222 |
Q |
| |
|
| || |||| |||||||||| |
|
|
| T |
10263196 |
cttatatatgtcaagtgtttgg |
10263175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 10361175 - 10361393
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| || | |||| |||||| ||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
10361175 |
ttgggaggtagacaaactccttcacaaaacgacaactctggccaatctagagtcaaccgttcaagagcggcaagcgtgtccatcttaagcttgacttcaa |
10361274 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
10361275 |
ataattcaattgaatcatgggatatgattataagtgattcgaggctcgacgaccgaggtgaagacctttctgaaatataaatggaatccagactcctaca |
10361374 |
T |
|
| Q |
201 |
atcatgtatgataagtgtt |
219 |
Q |
| |
|
|||| ||||| |||||||| |
|
|
| T |
10361375 |
atcacgtatggtaagtgtt |
10361393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 10431415 - 10431608
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | |||||| | || |||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10431415 |
ttgggaggtagacaaactccttcacaaaatgacagcttttgacatttcatatgcaacttttcaagagcggtgagcatgtccatcttaagcttgacttcaa |
10431514 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagact |
194 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
10431515 |
ataattcaattgaataatgggatctgatataaagtgattcgaggctcgacgaccgaggtgaagacctttctgaaatataaatggaatccagact |
10431608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9852434 - 9852213
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| | ||||| | || ||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9852434 |
ttgggaggtagacaaactccttcagaaaatgacaacttttggcatttcatatgcaaatcttcaagagcggtgagcatgtccatcttaagcttgacttcaa |
9852335 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||| |||||| |||||||||||||||| |||||| ||||| |||||||||||||||| || || |
|
|
| T |
9852334 |
ataattcaattgaattatgggatttgatccgaagtgattggaggcttgacgaccgaggtgaagacctttctaaaatataaatggaatccagacttctcca |
9852235 |
T |
|
| Q |
201 |
atcatgtatgataagtgtttgg |
222 |
Q |
| |
|
||||| ||| |||||||||| |
|
|
| T |
9852234 |
atcatcaatgtcaagtgtttgg |
9852213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10091492 - 10091273
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgc---acattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgactt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || | |||||| ||| |||| | ||||| || |||||| || ||||| ||||||||||| |
|
|
| T |
10091492 |
ttgggaggtagacaaactccttcacaaaatgacaacactcctcgacatttcagaaacaacttctcaagggcggtgagcgagttcatctgaagcttgactt |
10091393 |
T |
|
| Q |
98 |
caaataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcct |
197 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||||| ||| | ||||||||||||||| || |
|
|
| T |
10091392 |
taaacaattcaattgaatcatgggatctgatctcaagatattggaggctcgaggaccgaggtgaagacatttctaaaacattaatggaatccagactact |
10091293 |
T |
|
| Q |
198 |
acaatcatgtatgataagtg |
217 |
Q |
| |
|
|||| ||| |||| |||||| |
|
|
| T |
10091292 |
acaaccatctatggtaagtg |
10091273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10198374 - 10198155
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgc---acattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgactt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | |||||| ||| |||| | ||||| || |||||| || ||||| ||||||||||| |
|
|
| T |
10198374 |
ttgggaggtagacaaactccttcacaaaatgacaacagtcctcgacatttcagaaacaacttctcaagggcggtgagcgcgttcatctgaagcttgactt |
10198275 |
T |
|
| Q |
98 |
caaataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcct |
197 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||||| ||| | ||||||||||||||| || |
|
|
| T |
10198274 |
taaacaattcaattgaatcatgggatctgatctcaagatattggaggctcgaggaccgaggtgaagacatttctaaaacattaatggaatccagactact |
10198175 |
T |
|
| Q |
198 |
acaatcatgtatgataagtg |
217 |
Q |
| |
|
|||| ||| |||| |||||| |
|
|
| T |
10198174 |
acaaccatctatggtaagtg |
10198155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 10531356 - 10531156
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||| | ||| | |||| |||| ||||||||| |||||| |||||||| ||||||||||| || |
|
|
| T |
10531356 |
ttgggaggtagacaaattccttcacaaaataacaactcgggacaatctagagtcaattgttcaagagcagtgagcgtgtccatccgaagcttgactttaa |
10531257 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
||| ||||||||||||||||| |||| | ||||||| |||||| || |||||| ||| |||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
10531256 |
gcaatccaattgaatcatgggatttgattttaagtgatcggaggcttgatgaccgacgtggaggactttctgaaataaaaaccgaatccatactcctaca |
10531157 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
10531156 |
a |
10531156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 11771929 - 11771713
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| || | || ||| |||| | |||||||| || ||| || |||| ||||||||||| || |
|
|
| T |
11771929 |
ttgggaggtagacaaactccttcacaaaatgaaaacactccttgattcagaaacaacttctcaagagcggtaagcgagttcatccgaagcttgactttaa |
11771830 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||||| ||| | ||||||||||||||| ||||| |
|
|
| T |
11771829 |
acaattcaattgaatcatgggatctgatctcaagatattggaggctcgaggaccgaggtgaagacatttctaaaacattaatggaatccagactactaca |
11771730 |
T |
|
| Q |
201 |
atcatgtatgataagtg |
217 |
Q |
| |
|
| ||| |||| |||||| |
|
|
| T |
11771729 |
accatctatggtaagtg |
11771713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 11779356 - 11779559
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| || | || ||| |||| | |||||||| |||||| || |||| ||||||||||| || |
|
|
| T |
11779356 |
ttgggaggtagacaaactctttcacaaaatgaaaacactccttgattcagaaacaacttctcaagagcagtgagcgagttcatccgaagcttgactttaa |
11779455 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
| ||||||||| |||||||||||||||| ||||| | ||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
11779456 |
acaattcaattaaatcatgggatctgatttcaagatgtcggaggctcgacgactgaggtgaaggtgtttctaaaatataaatggaatccagactcctaca |
11779555 |
T |
|
| Q |
201 |
atca |
204 |
Q |
| |
|
|||| |
|
|
| T |
11779556 |
atca |
11779559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 10192864 - 10192655
Alignment:
| Q |
7 |
ggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaaataatt |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| || | | | || ||||||||| |||||| | |||||||||||||| ||| ||| |
|
|
| T |
10192864 |
ggtaggcaaactccttcacaaaatgacaactctccacaattcaaagcccactgttcaagagcagtgagcgt------cttaagcttgactttaaacaatc |
10192771 |
T |
|
| Q |
107 |
caattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctacaatcatg |
206 |
Q |
| |
|
|||||| | ||||||| |||| | |||||| | |||||| ||||||||| ||||||||||||| ||||| |||||||||||| || |||||||||| | |
|
|
| T |
10192770 |
caattgctttatgggatttgattttaagtgactggaggcttgacgaccgacatgaaggactttctaaaataaaaatggaatccaaacacctacaatcacg |
10192671 |
T |
|
| Q |
207 |
tatgataagtgtttgg |
222 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
10192670 |
tatgtcaagtgtttgg |
10192655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 10680154 - 10679955
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| ||| | |||| || | ||||||||| |||||| |||||||| ||||||||||| || |
|
|
| T |
10680154 |
ttgggaggtagacaaactccttcacaaa-taacaactctggacaatctagagtctattgttcaagagcagtgagcgtgtccatccgaagcttgactttaa |
10680056 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
| | ||||||||||||| ||| |||| | |||||||| |||||| |||| || |||| ||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
10680055 |
gcagtccaattgaatcatgtgatttgattttaagtgattggaggcttaacgattgatgtgatggactttctgaaataaaaactgaatccatactcctaca |
10679956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 13852838 - 13853034
Alignment:
| Q |
4 |
ggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaaata |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| | | ||||| ||||||||| || ||| |||||||| |||||| |||| || | |
|
|
| T |
13852838 |
ggaggtagacaaactccttcacaaaatgacaactctcgacattccaagtccaaccgttcaagagcggtaagcgtgtccatccgaagcttcactttaagtg |
13852937 |
T |
|
| Q |
104 |
attcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
|| ||||||| ||||||||| |||| |||||| || ||| || |||| ||| || |||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
13852938 |
atccaattgagtcatgggatttgattacaagtgtttggagtcttgacggtcgacttggaggactttctaaaatattaatggaatccagattcctaca |
13853034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 10583204 - 10583097
Alignment:
| Q |
5 |
gaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaaataa |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | ||||| | || ||| |||||||||| |||||||| |||||||||| ||||||||||||||| |
|
|
| T |
10583204 |
gaggtagacaaactccttcagaaaatgacaacttttggcatttcatatgcaaattttcaagagcggtgagcatttccatcttaaacttgacttcaaataa |
10583105 |
T |
|
| Q |
105 |
ttcaattg |
112 |
Q |
| |
|
|||||||| |
|
|
| T |
10583104 |
ttcaattg |
10583097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 10085944 - 10085735
Alignment:
| Q |
7 |
ggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaaataatt |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| | | | | || ||||||||| |||||| | |||||||||||||| ||| ||| |
|
|
| T |
10085944 |
ggtaggcaaactccttcacaaaatgacaactctccacaagtcaaagcccactgttcaagagcagtgagcgt------cttaagcttgactttaaacaatc |
10085851 |
T |
|
| Q |
107 |
caattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctacaatcatg |
206 |
Q |
| |
|
|||||| | ||||||| |||| | ||||| | |||||| ||||||||| ||||||||||||| ||||| |||||||||||| || |||||||||| | |
|
|
| T |
10085850 |
caattgctttatgggatttgattttaagtggctggaggcttgacgaccgacatgaaggactttctaaaataaaaatggaatccaaacacctacaatcacg |
10085751 |
T |
|
| Q |
207 |
tatgataagtgtttgg |
222 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
10085750 |
tatgtcaagtgtttgg |
10085735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 10503277 - 10503129
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| ||| | | | |||| ||||||||| |||||| ||| ||||| |||||||||||||| |
|
|
| T |
10503277 |
ttgggaggaagacaaactccttcacaaaatgataactcctgacaatccaagtccaactcttcaagagccgtgagcgtgttcatctgaagcttgacttcaa |
10503178 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcga |
149 |
Q |
| |
|
|| |||||| ||||||||||||| ||| | |||||||| ||||||||| |
|
|
| T |
10503177 |
atgattcaactgaatcatgggattggatatgaagtgattggaggctcga |
10503129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 9980157 - 9980070
Alignment:
| Q |
5 |
gaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagctt |
92 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | ||||| | || ||| ||||||| || | |||||| |||||||||||||| |
|
|
| T |
9980157 |
gaggtagacaaactccttcagaaaatgacaacttttggcatttcatatgcaaattttcaagggcggagagcatttccatcttaagctt |
9980070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 54980 - 55175
Alignment:
| Q |
5 |
gaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaaataa |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | ||||| | || ||| ||||||| || | |||||| |||||||||||||||||||||||||| |
|
|
| T |
54980 |
gaggtagacaaactccttcagaaaatgacaacttttggcatttcatatgcaaattttcaagggcggagagcatttccatcttaagcttgacttcaaataa |
55079 |
T |
|
| Q |
105 |
ttcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
||||||||||| | |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55080 |
ttcaattgaataacaggattcgattataagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaaaccagactcctaca |
55175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 26909583 - 26909381
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||| | |||| |||| ||||||| |||||||| |||||||| |||||| |||| || |
|
|
| T |
26909583 |
ttgggaggtagacaaacaccttcacaaaatgacaactctcgacagtccagatacaactgttcaagatctgtgagcgtgtccatccgaagcttcactttaa |
26909484 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||||||| ||||| |||| |||| |||||||| ||||||||||| |||||||||||| ||||||||| |
|
|
| T |
26909483 |
ataattcaattgaatcatgggatttgattttaagtgattcaaggcttgacggccgatgtgaaggagtttctgaaatataaatggaatccacactcctaca |
26909384 |
T |
|
| Q |
201 |
atc |
203 |
Q |
| |
|
||| |
|
|
| T |
26909383 |
atc |
26909381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 11487724 - 11487520
Alignment:
| Q |
1 |
ttgggaggtagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaa |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| ||| || ||| ||| ||||||||| ||||||||||||||| ||| ||||||| || |
|
|
| T |
11487724 |
ttgggaggtagagaaacatcttcacaaaatgacaactctggacaattcagagacaaaacttcaagagcagtgagcatgtccatccgaagtttgacttgaa |
11487625 |
T |
|
| Q |
101 |
ataattcaattgaatcatgggatctgatctcaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctaca |
200 |
Q |
| |
|
| || ||||||| ||||||||| |||| ||||| ||| |||||| ||||||| | ||||||||||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
11487624 |
gtgatccaattgagtcatgggatttgatttcaagagatcggaggcttgacgaccaacatgaaggactttctaaaataaaaatggaatccagacacctaca |
11487525 |
T |
|
| Q |
201 |
atcat |
205 |
Q |
| |
|
||||| |
|
|
| T |
11487524 |
atcat |
11487520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 44955174 - 44955233
Alignment:
| Q |
142 |
aggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagactcctacaa |
201 |
Q |
| |
|
||||| |||| |||||||||||||||||| |||| |||| |||||||||||||||||| |
|
|
| T |
44955174 |
aggcttgacggccgaggtgaaggactttccaaaatgaaaattgaatccagactcctacaa |
44955233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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