View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5311_low_66 (Length: 237)

Name: NF5311_low_66
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5311_low_66
NF5311_low_66
[»] chr1 (10 HSPs)
chr1 (1-224)||(13101748-13101971)
chr1 (7-224)||(13069403-13069620)
chr1 (7-224)||(13205219-13205436)
chr1 (10-224)||(13007948-13008162)
chr1 (7-224)||(30367320-30367537)
chr1 (46-220)||(14708193-14708367)
chr1 (4-66)||(13214394-13214456)
chr1 (134-224)||(13005688-13005778)
chr1 (167-224)||(13010993-13011050)
chr1 (112-220)||(13130592-13130700)
[»] chr6 (1 HSPs)
chr6 (7-224)||(31376261-31376475)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13101971 - 13101748
Alignment:
Q  1 atcccgacgtatggaaacaacagagggcaatgtttaattcatatctcaaaaggaaaaccttcatgaatttcttccaacaaactttgaagaaaaagctgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13101971 atcccgacgtatggaaacaacagagggcaatgtttaattcatatctcaaaaggaaaaccttcatgaatttcttccaacaaactatgaagaaaaagctgga 13101872  T
Q  101 gaagtgcctactaccgtttcttaatgatgtatttgaaataggtgctcatgtggacctggaggatgtcttgagtaggttcacttttgacagcatctgcact 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13101871 gaagtgcctactaccgtttcttaatgatgtatctgaaataggtgctcatgtggacctggaggatgtctttagtaggttcacttttgacagcatctgcact 13101772  T
Q  201 attgcatttggatttgatcctaat 224  Q
    ||||||||||||||||||||||||    
T  13101771 attgcatttggatttgatcctaat 13101748  T

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Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 13069403 - 13069620
Alignment:
Q  7 acgtatggaaacaacagagggcaatgtttaattcatatctcaaaaggaaaaccttcatgaatttcttccaacaaactttgaagaaaaagctggagaagtg 106  Q
    |||||||||||||||||||| |||||||| |||||| ||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| |     
T  13069403 acgtatggaaacaacagaggacaatgtttcattcatttcttaaaaggaaaaccttcaagaacttcttccaacaaactatgaagaaaaagctggagaacta 13069502  T
Q  107 cctactaccgtttcttaatgatgtatttgaaataggtgctcatgtggacctggaggatgtcttgagtaggttcacttttgacagcatctgcactattgca 206  Q
    ||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  13069503 cctactaccatttcttaatgatgtatctgaaataggtgctcaggtggacctggaggatgccttgagtaggttcacttttgatagcatctgcactattgca 13069602  T
Q  207 tttggatttgatcctaat 224  Q
    ||||||||||||||||||    
T  13069603 tttggatttgatcctaat 13069620  T

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Target: chr1; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 13205436 - 13205219
Alignment:
Q  7 acgtatggaaacaacagagggcaatgtttaattcatatctcaaaaggaaaaccttcatgaatttcttccaacaaactttgaagaaaaagctggagaagtg 106  Q
    |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| |     
T  13205436 acgtatggaaacaacagaggacaatgtttcattcatttctcaaaaggaaaaccttcaagaacttcttccaacaaactatgaagaaaaagctggagaacta 13205337  T
Q  107 cctactaccgtttcttaatgatgtatttgaaataggtgctcatgtggacctggaggatgtcttgagtaggttcacttttgacagcatctgcactattgca 206  Q
    ||||||||| |||||| ||||||||| |||||||||||||||  ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  13205336 cctactaccatttcttgatgatgtatctgaaataggtgctcagctggacctggaggatgccttgagtaggttcacttttgatagcatctgcactattgca 13205237  T
Q  207 tttggatttgatcctaat 224  Q
    ||||||||||||||||||    
T  13205236 tttggatttgatcctaat 13205219  T

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Target: chr1; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 13008162 - 13007948
Alignment:
Q  10 tatggaaacaacagagggcaatgtttaattcatatctcaaaaggaaaaccttcatgaatttcttccaacaaactttgaagaaaaagctggagaagtgcct 109  Q
    |||||||||||||| |  |||||||| |||||| |||||||||||||||||||| ||| || |||||||||||| ||||||||||| ||||||| ||| |    
T  13008162 tatggaaacaacagcgaacaatgtttcattcatttctcaaaaggaaaaccttcaagaactttttccaacaaactatgaagaaaaaggtggagaactgctt 13008063  T
Q  110 actaccgtttcttaatgatgtatttgaaataggtgctcatgtggacctggaggatgtcttgagtaggttcacttttgacagcatctgcactattgcattt 209  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13008062 actaccatttcttaatgatgtatctgaaataggtgctcaggtggacctggaggatgccttgagtaggttcacttttgacagcatctgcactattgcattt 13007963  T
Q  210 ggatttgatcctaat 224  Q
    |||||||||||||||    
T  13007962 ggatttgatcctaat 13007948  T

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Target: chr1; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 30367320 - 30367537
Alignment:
Q  7 acgtatggaaacaacagagggcaatgtttaattcatatctcaaaaggaaaaccttcatgaatttcttccaacaaactttgaagaaaaagctggagaagtg 106  Q
    ||||||||||| |  |||||||||||||| |||||  |||||||||||||| ||||| ||| || ||||||||||||   || |||||||||||||| |     
T  30367320 acgtatggaaagagaagagggcaatgtttcattcaattctcaaaaggaaaagcttcaagaacttgttccaacaaactagtaaaaaaaagctggagaaatt 30367419  T
Q  107 cctactaccgtttcttaatgatgtatttgaaataggtgctcatgtggacctggaggatgtcttgagtaggttcacttttgacagcatctgcactattgca 206  Q
    ||||||||| ||| |||||||||||| ||||  |||| || | |||||| || | ||| |||||| |||||||||||||||||||||||||| ||||| |    
T  30367420 cctactaccatttattaatgatgtatctgaagcaggttctgaggtggacttgcaagatatcttgaataggttcacttttgacagcatctgcattattgta 30367519  T
Q  207 tttggatttgatcctaat 224  Q
    |||||||||||| |||||    
T  30367520 tttggatttgattctaat 30367537  T

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Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 14708367 - 14708193
Alignment:
Q  46 tcaaaaggaaaaccttcatgaatttcttccaacaaactttgaagaaaaagctggagaagtgcctactaccgtttcttaatgatgtatttgaaataggtgc 145  Q
    |||||| ||||| ||||| ||| ||||||||||||||  |  |||| | | |||| || ||| ||||||| ||||||||| ||||||  ||| |||||||    
T  14708367 tcaaaaagaaaagcttcaagaacttcttccaacaaaccattcagaagaggttggaaaattgcttactaccatttcttaatcatgtatcagaagtaggtgc 14708268  T
Q  146 tcatgtggacctggaggatgtcttgagtaggttcacttttgacagcatctgcactattgcatttggatttgatcc 220  Q
    ||| |||||  |  | |||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||||    
T  14708267 tcaggtggatttacaagatgtcttgaataggttcacttttgacagcatcttcaccattgtatttggatttgatcc 14708193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 13214456 - 13214394
Alignment:
Q  4 ccgacgtatggaaacaacagagggcaatgtttaattcatatctcaaaaggaaaaccttcatga 66  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||||||| |||| ||||||||    
T  13214456 ccgacgtatgaaaacaacagaggacaatgtttaattcatttctcaaaagaaaaatcttcatga 13214394  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 13005778 - 13005688
Alignment:
Q  134 tgaaataggtgctcatgtggacctggaggatgtcttgagtaggttcacttttgacagcatctgcactattgcatttggatttgatcctaat 224  Q
    ||||||||| ||||| |||||| |||| |||| ||||| ||||||||  || |||| || ||||||| ||||||||  |||||||||||||    
T  13005778 tgaaataggagctcaagtggacttggaagatgccttgaataggttcatcttcgacaacacctgcactgttgcattttcatttgatcctaat 13005688  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 13011050 - 13010993
Alignment:
Q  167 cttgagtaggttcacttttgacagcatctgcactattgcatttggatttgatcctaat 224  Q
    |||||||||||| || ||||||||| |||||||  ||| |||||||||||||||||||    
T  13011050 cttgagtaggttaacatttgacagcctctgcaccgttgtatttggatttgatcctaat 13010993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 13130700 - 13130592
Alignment:
Q  112 taccgtttcttaatgatgtatttgaaataggtgctcatgtggacctggaggatgtcttgagtaggttcacttttgacagcatctgcactattgcatttgg 211  Q
    |||| |||||||||||||||| ||||  ||| |||||||||||  || | |||| ||| | ||||||||| ||||| |||| |||||  |||  ||| ||    
T  13130700 taccatttcttaatgatgtatctgaagcaggagctcatgtggatttgcaagatgcctttaataggttcacctttgatagcagctgcatgattttattcgg 13130601  T
Q  212 atttgatcc 220  Q
    |||||||||    
T  13130600 atttgatcc 13130592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 31376475 - 31376261
Alignment:
Q  7 acgtatggaaacaacagagggcaatgtttaattcatatctcaaaaggaaaaccttcatgaatttcttccaacaaactt-tgaagaaaaagctggagaagt 105  Q
    ||||||||||| |  ||||| |||||||| |||||  |||||||||||||| ||||| ||| || || |||||||||  | || |||||||||||||| |    
T  31376475 acgtatggaaagagaagaggacaatgtttcattcaattctcaaaaggaaaagcttcaagaacttgtttcaacaaactagtcaaaaaaaagctggagaaat 31376376  T
Q  106 gcctactaccgtttcttaatgatgtatttgaaataggtgctcatgtggacctggaggatgtcttgagtaggttcacttttgacagcatctgca-ctattg 204  Q
     ||||||||| ||| || |  ||   | ||||   ||| || | |||||| || | ||| |||||| ||||||||||||||||||||||||||  |||||    
T  31376375 tcctactaccatttattca--at---tctgaagctggttctgaggtggacttgcaagatatcttgaataggttcacttttgacagcatctgcatttattg 31376281  T
Q  205 catttggatttgatcctaat 224  Q
     |||||||||||||||||||    
T  31376280 tatttggatttgatcctaat 31376261  T

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