View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_68 (Length: 231)
Name: NF5311_low_68
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 13880988 - 13881100
Alignment:
| Q |
102 |
tttgaggataagatgaaaattataatgttatatttccatcagatttgaagactgactgagaagctcaaatggtggcctctgcatcacctccttcactgtt |
201 |
Q |
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| T |
13880988 |
tttgaggataagatgaaaattataatgttatatttccatcagatttgaagactgactgagaagctcaaatggtggcctctgcatcacctccttcactgtt |
13881087 |
T |
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| Q |
202 |
aaggggcatgagt |
214 |
Q |
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| T |
13881088 |
aaggggcatgagt |
13881100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 13254381 - 13254493
Alignment:
| Q |
102 |
tttgaggataagatgaaaattataatgttatatttccatcagatttgaagactgactgagaagctcaaatggtggcctctgcatcacctccttcactgtt |
201 |
Q |
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| T |
13254381 |
tttgaggataagatgaaaattataatgtaacattttcatcagatttgaagactgactgagaacctcaaatggtggcctatgtatcacctccttcattgtt |
13254480 |
T |
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| Q |
202 |
aaggggcatgagt |
214 |
Q |
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| T |
13254481 |
aaggggcatgagt |
13254493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 13880745 - 13880836
Alignment:
| Q |
13 |
gcataggaaacaaaagatgtagttactgcagctaccaatttcataaacattgaattgattttttcacaaatcctccaccattgatctactttg |
105 |
Q |
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| T |
13880745 |
gcataggaaacaaaagatgtagttactgcagctaccaatttcataaacattgaattga-tttttcacaaatcctccaccattgatctactttg |
13880836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 14367395 - 14367338
Alignment:
| Q |
157 |
ctgagaagctcaaatggtggcctctgcatcacctccttcactgttaaggggcatgagt |
214 |
Q |
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| T |
14367395 |
ctgagaacctcaaatggtggcttatgcatcacctccttcactgttaaggggcatgagt |
14367338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 13254239 - 13254277
Alignment:
| Q |
37 |
actgcagctaccaatttcataaacattgaattgattttt |
75 |
Q |
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| T |
13254239 |
actgcagctaccaatttcataaacattgaattgattttt |
13254277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 13878079 - 13878144
Alignment:
| Q |
39 |
tgcagctaccaatttcataaacattgaattgattttttcacaaatcctccaccattgatctactttg |
105 |
Q |
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| T |
13878079 |
tgcagccaccaatttcatcaccattgaattgatttcc-cacatatcctccaccattgatctactttg |
13878144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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