View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_69 (Length: 228)
Name: NF5311_low_69
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_69 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 31201411 - 31201183
Alignment:
| Q |
1 |
ctgttgatagagtatgagtaccgtggcctaaaaagtcgcgtgcggtacgttgccatgagggaagcttgtcactgtatgcctcgtaagcattgctgaagaa |
100 |
Q |
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| T |
31201411 |
ctgttgatagagtatgagtaccgtggcctaaaaagtcgcgtgcggtacgttgccatgagggaagcttgtcattgtatgcctcgtaagcattgctgaagaa |
31201312 |
T |
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| Q |
101 |
tctggctccaattagcttcctgtttatatataacaagaataattagtcctactccaatcagttttccctatcttggtaaccacggaaaaaatcagcatcc |
200 |
Q |
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| T |
31201311 |
tctggctccaattagcttcctgtttatatataacaagaataattagtcctactccaatcagttttccctatcttggtaaccacggaaaaaatcagcatcc |
31201212 |
T |
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| Q |
201 |
gagggtctcaaactaaacg-ggtagtcct |
228 |
Q |
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| T |
31201211 |
gagggtctcaaactaaacgaggtagtcct |
31201183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 31063757 - 31063878
Alignment:
| Q |
1 |
ctgttgatagagtatgagtaccgtggcctaaaaagtcgcgtgcggtacgttgccatgagggaagcttgtcactgtatgcctcgtaagcattgctgaagaa |
100 |
Q |
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|||||||||| |||||||||||||| |||| |||||| ||||| ||||| ||| ||| |||||| ||| || | ||| ||| ||||||| |||||| || |
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| T |
31063757 |
ctgttgatagtgtatgagtaccgtgacctacaaagtcacgtgctgtacgctgcgatgtgggaagtttgccattatatcgctcataagcatcgctgaaaaa |
31063856 |
T |
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| Q |
101 |
tctggctccaattagcttcctg |
122 |
Q |
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| T |
31063857 |
tctggctccaattagcttcctg |
31063878 |
T |
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