View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_low_9 (Length: 496)
Name: NF5311_low_9
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 101 - 491
Target Start/End: Original strand, 45291236 - 45291625
Alignment:
| Q |
101 |
agagtgagagatttgaggggagtattcaaaatttgaatttgaattgagtgaaacttgtctgagggttgtgcagatttggtgtttatggggtttgtctcat |
200 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45291236 |
agagtgagaggtttgaggggaggattcaaaatttgaatttgaattgagtgagacttgtctgagggttg-----atttggtgtttatggggtttgtctcat |
45291330 |
T |
|
| Q |
201 |
agcttgcaaagctgtttattttgagcttgataacagggaagattgttgaaaagcatcccnnnnnnnatgtttattgcattaaatgtttctgaaaaaagct |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45291331 |
agcttgcaaagctgtttattttgagcgtgataacagggaaaattgttgaaaagcatccctttttttatgtttattgcattaaatgtttctgaaaaaagct |
45291430 |
T |
|
| Q |
301 |
ggaacagtgatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttgtttgtttctgaaaacaatatttc------ttggag |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |
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| T |
45291431 |
cgaacagtgatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttgtttgtttctgaaa--aataggtctgaattttggag |
45291528 |
T |
|
| Q |
395 |
ggaaattaagcaatttaaattttgttggttaaaagttaattttgataagtaaaaagtgggtgaaaattatgtttgtgatacaacttactaaaaatga |
491 |
Q |
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| T |
45291529 |
ggaaattaagcaatttaaattttgttggttaaaagtgaattttgataatttaaaaatgggtgaaaatgatatttttgatccaacttactaaaaatga |
45291625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 45290114 - 45290171
Alignment:
| Q |
17 |
caaagcactctcaagaatcaagatacatatatcaagaatcaggaaatgaaaaacatac |
74 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45290114 |
caaaacactctcaagaatcaagatacatatatcaagaatcaggaaatgaaaaacatac |
45290171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 101 - 491
Target Start/End: Original strand, 12632595 - 12633003
Alignment:
| Q |
101 |
agagtgagagatttgaggggagtattcaaaatttgaatttgaattgagtgaaacttgtctgagggttgtgcagatttggtgtttatggggtttgtctca- |
199 |
Q |
| |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12632595 |
agagtgagagatttgaggggaggatttaaaatttgaatttgaattgagtgaaacttgtctgagggttgtgcagatttggtgtttatggagtttgtctcaa |
12632694 |
T |
|
| Q |
200 |
------tagcttgcaaagctgtttattttgagcttgataacagggaagattgttgaaaagcatcccnnnnnnnatgtttattgcattaaatgtttctgaa |
293 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |
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| T |
12632695 |
ctctcatagcttgcaaagctgtttatcttgagcgtgataacagggaagattgttgaaaagtatccctttt---atgcttattgcattaaatgtttctgaa |
12632791 |
T |
|
| Q |
294 |
aaaagctggaacagtgatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttgtttgtttctgaaaaca------------ |
381 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12632792 |
aaaagctggaacagcgatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttgtttgtttctgaaaaaataggtctgaaaa |
12632891 |
T |
|
| Q |
382 |
--atatttcttggagggaaattaagcaatttaaattttgttggttaaaagttaattttgataagtaaaaagtgggtgaaaattatgtttgtgatacaact |
479 |
Q |
| |
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|| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| | |||| ||||||||||| |||||| |||| ||||| |
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| T |
12632892 |
tgatgtttcttggagggaaatttagcaatttaaattttgttggttaaaagtgaattttgataatttaaaaatgggtgaaaatgatgtttttgatccaact |
12632991 |
T |
|
| Q |
480 |
tactaaaaatga |
491 |
Q |
| |
|
|||||||||||| |
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| T |
12632992 |
tactaaaaatga |
12633003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 12631723 - 12631780
Alignment:
| Q |
17 |
caaagcactctcaagaatcaagatacatatatcaagaatcaggaaatgaaaaacatac |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12631723 |
caaagcactctcaagaatcaagatacatatatcaagaatcaggaaatgaaaaacatac |
12631780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 2776089 - 2776032
Alignment:
| Q |
101 |
agagtgagagatttgagggga-gtattcaaaatttgaatttgaattgagtgaaacttgt |
158 |
Q |
| |
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|||||||||||||| |||||| |||| |||| ||||||||||||||||||||| ||||| |
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| T |
2776089 |
agagtgagagatttaaggggacgtat-caaattttgaatttgaattgagtgaagcttgt |
2776032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 101 - 491
Target Start/End: Complemental strand, 31606540 - 31606133
Alignment:
| Q |
101 |
agagtgagagatttgaggggagtattcaaaatttgaatttgaattgagtgaaacttgtctgagggttgtgcagatttggtgtttatggggtttgtctca- |
199 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
31606540 |
agagtgagagatttgaggggaggattcaaaatttgaatttgaattgagtgaaacttgtcagagggttgtgcagatttggtgtttatggagtttgtctcaa |
31606441 |
T |
|
| Q |
200 |
------tagcttgcaaagctgtttattttgagcttgataacagggaagattgttgaaaagcatcccnnnnnnnatgtttattgcattaaatgtttctgaa |
293 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
31606440 |
ctctcatagcttgcaaagctgtttatcttgagcgtgatagcagggaagattgttgaaaagcatccctttt---atgcttattgcattaaatgtttctgaa |
31606344 |
T |
|
| Q |
294 |
aaaagctggaacagtgatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttgtttgtttctg-------------aaaac |
380 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
31606343 |
aaaagctggaacagcgatgggttagagggttggactgagcataagttgggcctcatttcaaattggattttgtttgtttctgaaaaataggtctgaaaat |
31606244 |
T |
|
| Q |
381 |
aatatttcttggagggaaattaagcaatttaaattttgttggttaaaagttaattttgataagtaaaaagtgggtgaaaattatgtttgtgatacaactt |
480 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| ||||||||||| |||||| |||| |||||| |
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|
| T |
31606243 |
gatgtttcttggagggaaattaagcaatttaaattttgttggttaaaagtgaattttgataatttaaaaatgggtgaaaatgatgtttttgatccaactt |
31606144 |
T |
|
| Q |
481 |
actaaaaatga |
491 |
Q |
| |
|
||||||||||| |
|
|
| T |
31606143 |
actaaaaatga |
31606133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 31607420 - 31607363
Alignment:
| Q |
17 |
caaagcactctcaagaatcaagatacatatatcaagaatcaggaaatgaaaaacatac |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
31607420 |
caaagcactctcaagaatcaagatacatatatcaagaatgaggaaatgaaaaacatac |
31607363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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