View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312-Insertion-2 (Length: 467)
Name: NF5312-Insertion-2
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312-Insertion-2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 7 - 467
Target Start/End: Original strand, 10731444 - 10731929
Alignment:
| Q |
7 |
attttattcgttttgaaatatcactaaacaaaattgttcaaattctctagataatagatggagatattggagtttgtgaccgtgtcaacaacgttcacga |
106 |
Q |
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| T |
10731444 |
attttattcgttttgaaatatcactaaacaaaattgttcaaattctctagataatagatggagatattggagtttgtgaccgtgtcaacaacgttcacga |
10731543 |
T |
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| Q |
107 |
gtggagctatttgataaccgtgttggagttggaaccaaggaaattgaatcacagtccaactatcctcataaattctttaaagctgcattgtcgtgaagtt |
206 |
Q |
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| T |
10731544 |
gtggagctatttgataaccgtgttgaagttggaaccaaggaaattgaatcacagtccaactatcctcataaattctttaaagctgcattgtcgtgaagtt |
10731643 |
T |
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| Q |
207 |
aggacccgatctaccttgaaggac---acacaaaatataaggctgcattgtcaatataaatattcaaccaaattc--atatgttcaaacataaattcgac |
301 |
Q |
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| T |
10731644 |
aggacccgatctaccttgaaggacataacacaaaatataaggctgcattgtcaatataaatattcaaccaaattcatatatgttcaaacataaattcgac |
10731743 |
T |
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| Q |
302 |
acagtcgaaatagtaacactttgaatacattc--------------------aaactcaaacttattcaacattcaaccaagtttatgacataaacacta |
381 |
Q |
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| T |
10731744 |
acagtcgaaatagtaacactttgaatacattcaaccaaattcatacactttaaaactcaaacttattcaacattcaaccaagtttatgacataaacacta |
10731843 |
T |
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| Q |
382 |
atatacatacatacggaacgtgttgaaaataaccaaatttatgcataatttgtgacataaatgttgcggtaataaaatactaatgt |
467 |
Q |
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| T |
10731844 |
atatacatacatacggaacgtgttgaaaataaccaaatttatgcataatttgtgacataaatgttgcggtaataaaatactaatgt |
10731929 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 460
Target Start/End: Original strand, 1247827 - 1247875
Alignment:
| Q |
412 |
aaccaaatttatgcataatttgtgacataaatgttgcggtaataaaata |
460 |
Q |
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| T |
1247827 |
aaccaaattcatacataatttgtgccataaatgttgcgatattaaaata |
1247875 |
T |
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