View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312-Insertion-3 (Length: 344)
Name: NF5312-Insertion-3
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312-Insertion-3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 27929639 - 27929303
Alignment:
| Q |
8 |
agggagttactaccaattgaaataatataacttaaaagatatatatggtgaggaataaaataattggaaaaaattcgaccatgaaaaccacttacaaagt |
107 |
Q |
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| T |
27929639 |
agggagttactaccaattgaaataatataacttaaaaaatatatatggtgaggaataaaataattggaaaaaattcgaccatgaaaaccacttacaaagt |
27929540 |
T |
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| Q |
108 |
tggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagtaaaaagaggccacaatcaaatgagtt |
207 |
Q |
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| T |
27929539 |
tggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagcaaaaagaggccacaatcaaatgagtt |
27929440 |
T |
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| Q |
208 |
ttcctgctgtggtacctgtcaaggacattcaatcacaacattagtaaaaacacaatgaaatggagaaaatagaaagttgttcgatgataactcaattaat |
307 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
27929439 |
ttcctgctgtggtatctgtcaaggacattcaatcacaacattagtaaaaacacaatgaattggagaaaatagaaagttgttcgatgataactcaactaat |
27929340 |
T |
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| Q |
308 |
catcagccagagataggcgagaaataaattcaaaaag |
344 |
Q |
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| T |
27929339 |
catcagccagagataggcgagaaataaattcaaaaag |
27929303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 28082199 - 28082534
Alignment:
| Q |
8 |
agggagttactaccaattgaaataatataacttaaaagatatatatggtgaggaataaaataattggaaaaaattcgaccatgaaaaccacttacaaagt |
107 |
Q |
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| T |
28082199 |
agggagttactgccaattgaaataatataactttaaaaatatacaag-tgaggaacaaaataattggaaaaaagttaaccatgaaaaccacttacaaagt |
28082297 |
T |
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| Q |
108 |
tggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagtaaaaagaggccacaatcaaatgagtt |
207 |
Q |
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| T |
28082298 |
tggaacaattggttagtctcagagggttgaaatcaaatggaacttgagccacgaagagctctagataatgaagcaaaaagaggccacaatcaaatgagtt |
28082397 |
T |
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| Q |
208 |
ttcctgctgtggtacctgtcaaggacattcaatcacaacattagtaaaaacacaatgaaatggagaaaatagaaagttgttcgatgataactcaattaat |
307 |
Q |
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| T |
28082398 |
ttcctgctgtggtacctgtcaaggacattcagtcacaacattagtaaaagcacaatcaaatggagaaaatagaaagttgttcgatgataactcaactaat |
28082497 |
T |
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| Q |
308 |
catcagccagagataggcgagaaataaattcaaaaag |
344 |
Q |
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| T |
28082498 |
catcagccagagataggcgagaaataaattcaaaaag |
28082534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 75 - 343
Target Start/End: Complemental strand, 27935603 - 27935335
Alignment:
| Q |
75 |
aaaaaattcgaccatgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagata |
174 |
Q |
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|||||| || ||||||||||||||||||||||||||| |||||| || || | ||||||||||||||| |||||| || | | | |||| |||| ||||| |
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| T |
27935603 |
aaaaaagtcaaccatgaaaaccacttacaaagttggagaacttgattagtatcaaagggttgaaatcagatggaatttcatctaggaagcgctctagata |
27935504 |
T |
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| Q |
175 |
atgaagtaaaaagaggccacaatcaaatgagttttcctgctgtggtacctgtcaaggacattcaatcacaacattagtaaaaacacaatgaaatggagaa |
274 |
Q |
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| T |
27935503 |
atgaagtaaaaagaggccacaatcaaatttgttttcctgctgtggtacctgtcaaggacattcagtcacaacattagtaaaagcacaatcaaatggagaa |
27935404 |
T |
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| Q |
275 |
aatagaaagttgttcgatgataactcaattaatcatcagccagagataggcgagaaataaattcaaaaa |
343 |
Q |
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| T |
27935403 |
aatagaaagttgttcgatgataactcaactaatcatcagccagagataggagaggaataaattcaaaaa |
27935335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 46163596 - 46163458
Alignment:
| Q |
90 |
gaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagtaaaaagag |
189 |
Q |
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|||||| ||||||||| ||||| ||||||||| | | || || |||||| || ||| ||| ||| | ||||||||| || || || || | |||||| |
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| T |
46163596 |
gaaaacgacttacaaaattggaaaacttggttactttgaatggattgaaagtaagaggagcttcagcaaggaagagctctaggtagtgcagcagaaagag |
46163497 |
T |
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| Q |
190 |
gccacaatcaaatgagttttcctgctgtggtacctgtca |
228 |
Q |
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| T |
46163496 |
gccacaatcatatgagttttcttgctgtggcaactgtca |
46163458 |
T |
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