View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312-Insertion-4 (Length: 261)
Name: NF5312-Insertion-4
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 11343793 - 11343886
Alignment:
| Q |
159 |
gccacatgtcacgcagctgagagttggg-taaatggaggtttcataaatggagggaagatgaattccatatacacacaatagagagagaaagaa |
251 |
Q |
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| T |
11343793 |
gccacatgtcacccatataagagttggggtaaatggaggtttcataaatggagggaagatgaactccatatacacacaatagagaaagagagaa |
11343886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 11343689 - 11343731
Alignment:
| Q |
55 |
gtcgtgtgaagtttgaaccagaagagtaagtgcgtgtgacttc |
97 |
Q |
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| T |
11343689 |
gtcgtgtgaagtttgaactagaagagtaagtgcgtgtggcttc |
11343731 |
T |
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