View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_10 (Length: 435)
Name: NF5312_high_10
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Complemental strand, 11297994 - 11297588
Alignment:
| Q |
13 |
atactcttgcagacaccatcatcattgttaactagagacgatggtgaaaattcaatgctagtgttaagtgtttttcttccttgtactattgtaatgcaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11297994 |
atactcttgcagacaccatcatcattgttaactagagacgatggtgaaaattcaatgctagtgttaagtgtttttcttccttgtactattgtaatgcaaa |
11297895 |
T |
|
| Q |
113 |
gcaagacaattgagaaaagattaactactttgctgctggccat---gacaatgtagttaattatgcttatgctcatccataggaacagtttttataggct |
209 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11297894 |
gcaagacaattgataaaagattaactactttgctgctggccatattgacaatgtagttaattatgcttatgctcatccataggaacagtttttataggct |
11297795 |
T |
|
| Q |
210 |
aaaacaaattaagttgaagacaaaattgcacttaattaatgtgattattaatgattgtgttcacgctaagaaatttatgatcgataagaaaacattagca |
309 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11297794 |
aaaacaaattaagttgtagacaaaattgcacttaattaatgtgataattaatgattgtgttcacgctaagaaatttatgatcgataagaaaacattagca |
11297695 |
T |
|
| Q |
310 |
ttaccatagcattcgaaacattggcaatcatagacaaattactatgttaatgtgattttgacaatttaggttgacgtaactcgtatgctatattactagt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11297694 |
ttaccatagcattcgaaacattggcaatcatagacaaattactatgttaatgtgattttggcaatttaggttgacgtaactcgtatgctatattactagt |
11297595 |
T |
|
| Q |
410 |
tggagtt |
416 |
Q |
| |
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||||||| |
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| T |
11297594 |
tggagtt |
11297588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 11292641 - 11292399
Alignment:
| Q |
13 |
atactcttgcagacaccatcatcattgttaactagagacgatggtgaaaattcaatgctagtgttaagtgtttttcttccttgtactattgtaatgcaaa |
112 |
Q |
| |
|
||||||||||||| |||||| ||||||||| |||||||||||| |||||||||| | |||||||| | ||||||||||||||||||||||||||||||| |
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| T |
11292641 |
atactcttgcagataccatcgtcattgttatctagagacgatgctgaaaattcattactagtgtttatggtttttcttccttgtactattgtaatgcaaa |
11292542 |
T |
|
| Q |
113 |
gcaagacaattgagaaaagattaactactttgctgctggcca---tgacaatgtagttaattatgcttatgctcatccataggaacagtttttataggct |
209 |
Q |
| |
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||| ||||||||||||||||||||||||||| || ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11292541 |
gcatgacaattgagaaaagattaactactttcctcctggccatattgacaatgtggttaattatgtttatgctcatccataggaacagtttttataggct |
11292442 |
T |
|
| Q |
210 |
aaaaca----aattaagttgaagacaaaattgcacttaattaa |
248 |
Q |
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|||||| |||||||||||||||||||||||| |||||||| |
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| T |
11292441 |
aaaacaaattaattaagttgaagacaaaattgcatttaattaa |
11292399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 250 - 366
Target Start/End: Complemental strand, 11292374 - 11292258
Alignment:
| Q |
250 |
gtgattattaatgattgtgttcacgctaagaaatttatgatcgataagaaaacattagcattaccatagcattcgaaacattggcaatcatagacaaatt |
349 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||| |||||||| |||||| ||| |||||||||| | || || ||| |||||| |
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| T |
11292374 |
gtgattattaatagttgtgttcacgctaagaaatttatgatcaataacaaaacattgagattacctgagcgttcgaaacatcgacattcttaggcaaatt |
11292275 |
T |
|
| Q |
350 |
actatgttaatgtgatt |
366 |
Q |
| |
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|||| |||||||||||| |
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| T |
11292274 |
actaagttaatgtgatt |
11292258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 11292227 - 11292175
Alignment:
| Q |
364 |
attttgacaatttaggttgacgtaactcgtatgctatattactagttggagtt |
416 |
Q |
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|||||| |||||| | |||||||||||| || ||||| ||||||||||||||| |
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| T |
11292227 |
attttggcaatttggattgacgtaactcctaggctatcttactagttggagtt |
11292175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 30909601 - 30909459
Alignment:
| Q |
13 |
atactcttgcagacaccatcatcattgttaactagagacgatggtgaaaattcaatgctagtgttaagtgtttttcttccttgtactattgtaatgcaaa |
112 |
Q |
| |
|
||||| ||||||| |||||||| ||||||||||||||||||| |||||||||| || |||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
30909601 |
atacttttgcagatgccatcatcgttgttaactagagacgatgctgaaaattcattgttagtgttaagtgcttttcttccttgtgctattgtaatgcaaa |
30909502 |
T |
|
| Q |
113 |
gcaagacaattgagaaaagattaactactttgctgctggccat |
155 |
Q |
| |
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|||||| |||||||||||| ||||||| ||||||||||||| |
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| T |
30909501 |
tcaagactattgagaaaagaccaactactctgctgctggccat |
30909459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 180
Target Start/End: Complemental strand, 30903122 - 30902969
Alignment:
| Q |
30 |
atcatcattgttaactagagacgatggtgaaaattcaatgctagtgttaagtgtttttcttccttgtactattgtaatgcaaagcaagacaattgagaaa |
129 |
Q |
| |
|
|||||||| | |||||||||| |||| ||||| |||| || | |||| ||||||||||||||||||| ||| ||||||||||| |||||| ||||||| |
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| T |
30903122 |
atcatcatcggtaactagagaggatgctgaaatttcattggttgtgtgaagtgtttttcttccttgtgctactgtaatgcaaaacaagactattgagatt |
30903023 |
T |
|
| Q |
130 |
agattaactactttgctgctggcca---tgacaatgtagttaattatgcttatg |
180 |
Q |
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||| |||||| | | ||||||||| ||||||||| ||||||| |||||||| |
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| T |
30903022 |
agactaactagtattgtgctggccatgttgacaatgtggttaattttgcttatg |
30902969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 30909246 - 30909188
Alignment:
| Q |
308 |
cattaccatagcattcgaaacattggcaatcatagacaaattactatgttaatgtgatt |
366 |
Q |
| |
|
||||||| ||| |||||||||||| || |||||| |||||||||||||||||||||| |
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|
| T |
30909246 |
cattacctgagcgttcgaaacattgacattcataggtaaattactatgttaatgtgatt |
30909188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 36706364 - 36706423
Alignment:
| Q |
73 |
gtgttaagtgtttttcttccttgtactattgtaatgcaaagcaagacaattgagaaaaga |
132 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||||||||||||||||| | ||||| |||| |
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|
| T |
36706364 |
gtgtaaagtgtttttcttccttgtgttgttgtaatgcaaagcaagactaatgagataaga |
36706423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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