View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_11 (Length: 434)
Name: NF5312_high_11
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 51151253 - 51151664
Alignment:
| Q |
16 |
tctctttctcgagccccaacattctttactcacctgcctcttctctctcccttgtctgcagtacaaatgtgtagtcaagttttagactttcattttaccn |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51151253 |
tctctttctcgagccccaacattctttactcacctgcctcttctctctcccttgtctgcagtacaaatgtgtagtcaagttttagactttcattttacca |
51151352 |
T |
|
| Q |
116 |
nnnnnngttatgaactttcagnnnnnnnaggtggagattttctgctaatggtacagtttttaaggattagtttatttcactaacactaaaccactactaa |
215 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51151353 |
aaaaaagttatgaactttcagtttttttaggtggagattttttgctaatggtacagtttttaaggattagtttatttcactaacactaaaccactactag |
51151452 |
T |
|
| Q |
216 |
taactgcannnnnnnattaataattacttcatttagttttatgtacttggtactaaccattatgttccttgctcttgtttgtgagtagtgttgaacttcc |
315 |
Q |
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|||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51151453 |
taactgcatttttttattaataattactacatttatttttatgtacttggtactaaccattatgttccttgctcttgtttgtgagtagtgttgaacttcc |
51151552 |
T |
|
| Q |
316 |
tgagacaagatgctgctgattttctgtcaaagaggaaatggtttaactcagtcttggtnnnnnnngaaac-nnnnnnngtgttcttagaaacccatttga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
51151553 |
tgagacaagatgctgctgattttctgtcaaagaggaaatggtttaactcagtcttggtaaaaaaagaaacttttttttgtgttcttagaaacccatttga |
51151652 |
T |
|
| Q |
415 |
aagtttcatctc |
426 |
Q |
| |
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|||||||||||| |
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| T |
51151653 |
aagtttcatctc |
51151664 |
T |
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