View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_17 (Length: 389)
Name: NF5312_high_17
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 36773212 - 36772857
Alignment:
| Q |
18 |
accggcatcagtcataatcagctgaattgcagttgcaattactaaaaaagtcaatacaatctttttatctatgattctatgaagcaagtgtgaattagga |
117 |
Q |
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| T |
36773212 |
accggcatcagtcataatcagctgaattgcagttgcaattactaaaaaagtcaatacaatctttttatctatgattctatgaagcaagtgtgaattagga |
36773113 |
T |
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| Q |
118 |
catgaccttagtattaaacaataaagggttgtcacataggtcatgataaccaacagaattaaggacagttttcggtcaggtatcagagttatgaagagta |
217 |
Q |
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| T |
36773112 |
catgaccttagtattaaacaataaagggttgtcacataggtcatgataagcaacagaattaaggacactttttggtcaggtatcagagttatgaagagta |
36773013 |
T |
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| Q |
218 |
tgatccaaataaaaagtgtatagtatagccctatattcttcaagtttcttatgatgcgagatgccgcaacttcttgtgtcaagggaatgttaattgggca |
317 |
Q |
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| T |
36773012 |
tcatccaaataaaaagtgtatagtatagccctatatgcttcaagtttcttatgatgcgagatgctgcaacttcttgtgtcaagggaaggttaattgggca |
36772913 |
T |
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| Q |
318 |
atagaatttgaaattagcatatagtttttcatgtggtgattttggttcatatgtgt |
373 |
Q |
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| T |
36772912 |
atagaatttgaaattagcatatagtttttcatgtggtgattttggttcatatgtgt |
36772857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 28 - 365
Target Start/End: Complemental strand, 36770958 - 36770621
Alignment:
| Q |
28 |
gtcataatcagctgaattgcagttgcaattactaaaaaagtcaatacaatctttttatctatgattctatgaagcaagtgtgaattaggacatgacctta |
127 |
Q |
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| T |
36770958 |
gtcaaaatcagctgaattgcagttgcaataaatagcaaactcaacacaatccttttatctatgatcctatgaagcacaactgaattaggacatgccctta |
36770859 |
T |
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| Q |
128 |
gtattaaacaataaagggttgtcacataggtcatgataaccaacagaattaaggacagttttcggtcaggtatcagagttatgaagagtatgatccaaat |
227 |
Q |
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| T |
36770858 |
atagtaaacaataaagggttgtcacataagtcatgataaccaacagaatcaacgacacttttcgttccggtatgagggttatgaagagtatgatccaaat |
36770759 |
T |
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| Q |
228 |
aaaaagtgtatagtatagccctatattcttcaagtttcttatgatgcgagatgccgcaacttcttgtgtcaagggaatgttaattgggcaatagaatttg |
327 |
Q |
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| T |
36770758 |
aaagagtgtgtagtataaccccaaattccctaagtttcttatgatgcgagatgctgcagcatcttgtgttaaggggatgttaattgggcaatagaatttg |
36770659 |
T |
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| Q |
328 |
aaattagcatatagtttttcatgtggtgattttggttc |
365 |
Q |
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| T |
36770658 |
agatcagcatatagtttttcatgtggtgattttggttc |
36770621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 16749153 - 16749228
Alignment:
| Q |
298 |
aagggaatgttaattgggcaatagaatttgaaattagcatatagtttttcatgtggtgattttggttcatatgtgt |
373 |
Q |
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| T |
16749153 |
aagggaatgataattgggcaatatcatttgaaatgagcatacagttttaattttggtgattttggttcatacgtgt |
16749228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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