View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_20 (Length: 374)
Name: NF5312_high_20
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 9888010 - 9888350
Alignment:
| Q |
16 |
atcactacagatgtattagtaaagagaaatgagacaaaaattgaagaaaataaatgaaccaactactttcagctacgcatcatacaagctgcaaagaaag |
115 |
Q |
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| T |
9888010 |
atcactacagatgtattagtaaagagaaatgagacaaaaattgaagaaaataaattaaccaactactttcagctacgcatcatacaagctgcgaagaaag |
9888109 |
T |
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| Q |
116 |
tcatggacatgccactgtctcatgcccattgcgcagaggaggcttgcacattttgcagttatgttattgaactggtgggtcacgatttcctatatgaggc |
215 |
Q |
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| T |
9888110 |
tcatggacatgccactgtctcatgcccattgtgcagaggaggtttgcacattttgcagttatgttattgaactggtgggtcacgatttcctatatgaggc |
9888209 |
T |
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| Q |
216 |
aagaaacaacactcgtttagggttcaannnnnnnatgaaaagaaatatgaggaatacgatttctaaacaattcaaattgaagatcaaccttggaaataag |
315 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9888210 |
aagaaacaacactcgtttagggttcaatttttttatgaaaagaaatatgaggaatgcgatttctaaacaattcaaactgaagatcaaccttggaaataag |
9888309 |
T |
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| Q |
316 |
attggggctttattatcatcatcattatcaaccttggaaat |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
9888310 |
attggggctttattatcatcatcattatcaaccttggaaat |
9888350 |
T |
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