View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_24 (Length: 340)
Name: NF5312_high_24
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 39073601 - 39073306
Alignment:
| Q |
13 |
tcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatacgaatcttctcactgattctttctcttctatgtctagctg |
112 |
Q |
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| T |
39073601 |
tcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatacgaatcttctcactgattctttctcttctatgtctagctg |
39073502 |
T |
|
| Q |
113 |
caacactttgtggatcttcgctgattcgaacgtttcttcgttttggttttcgaatcgttgctgggtcgatgtccaccggttgcatagctgcaatcttgta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39073501 |
caacactttgtggatcttcgctgattcgaacgtttcttcgttttggttttcgaatcgttgctgggtcgatgtccaccggttgcatagctgcaatcttgta |
39073402 |
T |
|
| Q |
213 |
catcatttccttcatagctcctaactcttcttcttgttcttctacgtcttcgattcgatggatccctaagatgtcactgagtgaacctgatgaaga |
308 |
Q |
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| T |
39073401 |
catcatttccttcatagctcctaactcttcttcttgttcttctacgtcttcgattcgatggatccctaagatgtcactgagtgaacctgatgaaga |
39073306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 6259687 - 6259580
Alignment:
| Q |
21 |
catagaagctgtatccattttagttccaccaggaacaagtctttgaaggatacgaatcttctcactgattctttctcttctatgtctagctgcaacactt |
120 |
Q |
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| T |
6259687 |
catagaagcagtgtccatttttgttccaccaggtactaatctttgtaatatccttattctttcactaattctttctcttctatgtcttgctgctacactt |
6259588 |
T |
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| Q |
121 |
tgtggatc |
128 |
Q |
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| T |
6259587 |
tgtggatc |
6259580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 46899403 - 46899304
Alignment:
| Q |
31 |
gtatccattttagttccaccaggaacaagtctttgaaggatacgaatcttctcactgattctttctcttctatgtctagctgcaacactttgtggatctt |
130 |
Q |
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| T |
46899403 |
gtatccattttagttccacctggtaccattctttgcagtattcttattttctcgcttattctttctcttctgtgtctagctgctatactctgaggatctt |
46899304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 25645275 - 25645321
Alignment:
| Q |
82 |
tcactgattctttctcttctatgtctagctgcaacactttgtggatc |
128 |
Q |
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||||||||||| | |||||| | |||||||||||||||||||||||| |
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| T |
25645275 |
tcactgattctatgtcttctttctctagctgcaacactttgtggatc |
25645321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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