View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5312_high_25 (Length: 339)

Name: NF5312_high_25
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5312_high_25
NF5312_high_25
[»] chr5 (6 HSPs)
chr5 (1-263)||(11334917-11335179)
chr5 (258-330)||(11320739-11320811)
chr5 (26-163)||(11335202-11335344)
chr5 (266-322)||(24137326-24137382)
chr5 (91-164)||(11335312-11335384)
chr5 (1-45)||(9511908-9511952)
[»] chr7 (8 HSPs)
chr7 (197-311)||(26403200-26403314)
chr7 (208-322)||(3889163-3889279)
chr7 (91-180)||(44338660-44338748)
chr7 (197-275)||(10236744-10236822)
chr7 (133-195)||(26403166-26403228)
chr7 (278-320)||(46963394-46963436)
chr7 (208-322)||(3889420-3889536)
chr7 (181-322)||(3901887-3902028)
[»] chr8 (3 HSPs)
chr8 (191-254)||(32041645-32041708)
chr8 (91-180)||(20242337-20242425)
chr8 (91-180)||(20250735-20250823)
[»] chr2 (6 HSPs)
chr2 (1-170)||(38583910-38584078)
chr2 (91-186)||(29409336-29409429)
chr2 (258-322)||(32290876-32290940)
chr2 (180-240)||(1173120-1173178)
chr2 (278-320)||(8986666-8986708)
chr2 (266-307)||(9047984-9048025)
[»] chr1 (6 HSPs)
chr1 (60-210)||(9168107-9168258)
chr1 (272-322)||(15629681-15629731)
chr1 (258-322)||(9168053-9168117)
chr1 (266-313)||(2071866-2071914)
chr1 (266-313)||(2075396-2075444)
chr1 (277-329)||(3774635-3774687)
[»] chr3 (3 HSPs)
chr3 (53-114)||(42530806-42530868)
chr3 (266-322)||(50296009-50296065)
chr3 (266-322)||(46691771-46691827)
[»] chr4 (2 HSPs)
chr4 (197-249)||(7259241-7259292)
chr4 (278-311)||(16871390-16871423)
[»] chr6 (4 HSPs)
chr6 (276-314)||(9290978-9291016)
chr6 (191-244)||(18984209-18984262)
chr6 (93-163)||(18984142-18984211)
chr6 (258-322)||(18984248-18984312)
[»] scaffold0007 (3 HSPs)
scaffold0007 (191-244)||(14629-14682)
scaffold0007 (93-180)||(14663-14749)
scaffold0007 (258-322)||(14579-14643)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 11335179 - 11334917
Alignment:
Q  1 ttgcattgcacttctcctccccttatgattcttctaattgattgccctgcatttctcctcttttaattcttctgattgatttcacttcttcccttttgat 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  11335179 ttgcattgcacttctcctccccttatgattcttctgattgattgccctgcacttctcctcttttaattcttcagattgatttcacttcttcccttttgat 11335080  T
Q  101 tctttagattgattttgcacttctcccttatggattcttatgattgattgaattgcacttctccttattgatttttatgtttggttgctcctctcaattg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  11335079 tctttagattgattttgcacttctcccttatggattcttttgattgattgaattgcacttctccttattgatttttctgtttggttgctcctctctattg 11334980  T
Q  201 gttcttttgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgggttct 263  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11334979 gttcttttgtatggttgtttctctctatcggttcttttgtttggtttggtttgattgggttct 11334917  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 11320811 - 11320739
Alignment:
Q  258 ggttcttatgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctctttgatgat 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11320811 ggttcttatgtttagatggttctctctttgagtggttgatggtgatggtgcttgttgccctctctttgatgat 11320739  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 11335344 - 11335202
Alignment:
Q  26 tgattcttctaattgattgccctgcatttctcctcttttaattcttctgattgatttcacttcttc-ccttttgattctttagattgat---tttgcact 121  Q
    |||||||||| |||||||||  |||| |||||| ||||| |||||| ||||||||||||||||| | ||| ||||||||    ||||||   ||||||||    
T  11335344 tgattcttctgattgattgcattgcacttctccccttttcattcttttgattgatttcacttctcctcctattgattctccttattgattgctttgcact 11335245  T
Q  122 tctcc-cttatggattcttatgattgattgaattgcacttctc 163  Q
    ||||| ||||| ||||||  ||||||||||  |||||||||||    
T  11335244 tctcctcttattgattctcctgattgattgctttgcacttctc 11335202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 24137326 - 24137382
Alignment:
Q  266 tgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 322  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||| ||| ||||||    
T  24137326 tgtttggatggttctctatttgattggttgatggtgatggttcttgctgctctctct 24137382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 11335384 - 11335312
Alignment:
Q  91 cccttttgattctttagattgattttgcacttctccct-tatggattcttatgattgattgaattgcacttctcc 164  Q
    ||||||||||||||| ||||||||   ||||||||||  ||| ||||||| |||||||||| |||||||||||||    
T  11335384 cccttttgattcttttgattgatta--cacttctccccctattgattcttctgattgattgcattgcacttctcc 11335312  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9511908 - 9511952
Alignment:
Q  1 ttgcattgcacttctcctccccttatgattcttctaattgattgc 45  Q
    |||||||||||||||  ||||||| |||||||||| |||||||||    
T  9511908 ttgcattgcacttctgatccccttttgattcttctgattgattgc 9511952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 197 - 311
Target Start/End: Original strand, 26403200 - 26403314
Alignment:
Q  197 attggttcttttgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgggttcttatgtttagatggttctctctttgagtggttga 296  Q
    |||| |||||||||||||||| ||||||| | |  ||||||||||||||||||||||| | ||||||| ||||||||||||||||| ||| | |||||||    
T  26403200 attgattcttttgtatggctgcttctctccaccaattcttttgtttggtttggtttgacttggttcttctgtttagatggttctctatttaactggttga 26403299  T
Q  297 tggtgatggttcttg 311  Q
    |||| ||| ||||||    
T  26403300 tggtaatgattcttg 26403314  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 322
Target Start/End: Original strand, 3889163 - 3889279
Alignment:
Q  208 tgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgg-----gttcttatgtttagatggttctctctttgagtggttgatggtga 302  Q
    ||||||| || ||||| ||| ||||||||||||||||||||||||| ||||     |||||||||||| |||||||   ||||||  ||||||||| |||    
T  3889163 tgtatggttgcttctccctaccggttcttttgtttggtttggtttggttggacttagttcttatgtttggatggtt---tctttggttggttgatgttga 3889259  T
Q  303 tggttcttgttgccctctct 322  Q
    |  |||||||||| ||||||    
T  3889260 ttattcttgttgctctctct 3889279  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 44338660 - 44338748
Alignment:
Q  91 cccttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 180  Q
    ||||||||||||||| ||||||||  |||||| |||| |||||||||||| |||||||  | ||||||||||||  ||||| |||||||||    
T  44338660 cccttttgattcttttgattgatt--gcacttatccccttatggattcttctgattgagagcattgcacttctctctattggtttttatgt 44338748  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 275
Target Start/End: Original strand, 10236744 - 10236822
Alignment:
Q  197 attggttcttttgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgggttcttatgtttagatg 275  Q
    |||||||||| | ||||| || ||||| ||| |||||||||||||||| || |||||| | ||||||| ||||| ||||    
T  10236744 attggttcttctatatggttgcttctccctagcggttcttttgtttggatttgtttgacttggttcttttgtttggatg 10236822  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 26403166 - 26403228
Alignment:
Q  133 gattcttatgattgattgaattgcacttctccttattgatttttatgtttggttgctcctctc 195  Q
    ||||||| |||||||||| ||||||||||||| |||||||| || ||| ||| |||| |||||    
T  26403166 gattcttttgattgattgcattgcacttctccctattgattcttttgtatggctgcttctctc 26403228  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 46963436 - 46963394
Alignment:
Q  278 tctctctttgagtggttgatggtgatggttcttgttgccctct 320  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||    
T  46963436 tctctctttgattggttgatggtgatggttcttgctgctctct 46963394  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 322
Target Start/End: Original strand, 3889420 - 3889536
Alignment:
Q  208 tgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgg-----gttcttatgtttagatggttctctctttgagtggttgatggtga 302  Q
    ||||||| || ||||| ||| ||||||||||||||| ||||||||  || |     |||||||||||| |||||||   ||||||  |||||||||||||    
T  3889420 tgtatggttgcttctccctaccggttcttttgtttgatttggtttcgtttgacttagttcttatgtttggatggtt---tctttggttggttgatggtga 3889516  T
Q  303 tggttcttgttgccctctct 322  Q
    |  |||||||||| ||||||    
T  3889517 ttattcttgttgctctctct 3889536  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 322
Target Start/End: Original strand, 3901887 - 3902028
Alignment:
Q  181 ttggttgctcctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttggttt-----ggtttgattgggttcttatgtttagatg 275  Q
    |||||||||||||||| |  |||| | ||||||| || ||||| ||| |||||||||||| ||||||     ||||||| |  |||||||||||| ||||    
T  3901887 ttggttgctcctctcatt--gttcgtatgtatggttgcttctccctaccggttcttttgtatggtttagtttggtttgacttagttcttatgtttggatg 3901984  T
Q  276 gttctctctttgagtggttgatggtgatggttcttgttgccctctct 322  Q
    |||   ||||||  ||||||||||| ||  |||||||||| ||||||    
T  3901985 gtt---tctttggttggttgatggttattattcttgttgctctctct 3902028  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 32041645 - 32041708
Alignment:
Q  191 ctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttggtttggtttga 254  Q
    ||||| ||| |||||||||||||| || ||||||||| ||||||||||||||||||| ||||||    
T  32041645 ctctctatttgttcttttgtatggttgattctctctaccggttcttttgtttggtttagtttga 32041708  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 20242337 - 20242425
Alignment:
Q  91 cccttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 180  Q
    ||||||||||||||| ||||||||  |||||| |||| |||||||||||| |||||||  | ||||||||||||  ||||| |||||||||    
T  20242337 cccttttgattcttttgattgatt--gcacttatccccttatggattcttctgattgagagcattgcacttctctctattggtttttatgt 20242425  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 20250823 - 20250735
Alignment:
Q  91 cccttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 180  Q
    ||||||||||||||| ||||||||  |||||| |||| |||||||||||| |||||||  | ||||||||||||  ||||| |||||||||    
T  20250823 cccttttgattcttttgattgatt--gcacttatccccttatggattcttctgattgagagcattgcacttctctctattggtttttatgt 20250735  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 38584078 - 38583910
Alignment:
Q  1 ttgcattgcacttctcctccccttatgattcttctaattgattgccctgcatttctcctc-ttttaattcttctgattg-atttcacttctt-ccctttt 97  Q
    |||||| ||||||||||  ||||| ||||| |||| | |||||||  |||| |||||| | |||| ||||||||||||| ||| || ||||  |||||||    
T  38584078 ttgcatcgcacttctcc--cccttttgatttttctgagtgattgcattgcacttctcccccttttgattcttctgattgcattgcatttctcgccctttt 38583981  T
Q  98 gattctttagattgattttgcacttctcccttatggattcttatgattgattgaattgcacttctccttattg 170  Q
    |||||||  ||||||||  |||||||||||   | ||||||| |||||||||| |||||||||||| ||||||    
T  38583980 gattcttctgattgatt--gcacttctccccctttgattcttctgattgattgtattgcacttctctttattg 38583910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 29409429 - 29409336
Alignment:
Q  91 cccttttgattctttagattgattttgcacttctcccttatggattcttatgattgattgaattgcacttctccttattgatttttatgtttggtt 186  Q
    |||| |||||||||  ||||||||  |||| |||||| | | ||||||| |||||||||| ||||||||||||| |||||||| || |||||||||    
T  29409429 ccctattgattcttctgattgatt--gcacgtctcccctgttgattcttctgattgattgcattgcacttctccctattgattcttctgtttggtt 29409336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 32290876 - 32290940
Alignment:
Q  258 ggttcttatgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 322  Q
    ||||||| ||||| ||||||||||||||||| ||||||||| ||||| |||||| ||| ||||||    
T  32290876 ggttcttttgtttggatggttctctctttgattggttgatgatgatgattcttgctgctctctct 32290940  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 1173178 - 1173120
Alignment:
Q  180 tttggttgctcctctcaattggttcttttgtatggctgtttctctctatcggttcttttgt 240  Q
    |||||||||||||||  ||||||||||||||||| ||| ||||||||| | ||||||||||    
T  1173178 tttggttgctcctct--attggttcttttgtatgactgcttctctctacctgttcttttgt 1173120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 8986666 - 8986708
Alignment:
Q  278 tctctctttgagtggttgatggtgatggttcttgttgccctct 320  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||    
T  8986666 tctctctttgattggttgatggtgatggttcttgctgctctct 8986708  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 9048025 - 9047984
Alignment:
Q  266 tgtttagatggttctctctttgagtggttgatggtgatggtt 307  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||    
T  9048025 tgtttggatggttctctttttgattggttgatggtgatggtt 9047984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 9168258 - 9168107
Alignment:
Q  60 cttttaattcttctgattg-atttcacttcttc-ccttttgattctttagattgattttgcacttctccctt-atggattcttatgattgattgaattgc 156  Q
    ||||| |||||||| |||| ||| ||||||| | |||||||||||||  ||| ||||  ||||||||||||| |||||||||| | |||||| | |||||    
T  9168258 cttttcattcttcttattgcattgcacttctcctccttttgattcttctgatcgatt--gcacttctccctttatggattcttctaattgatagcattgc 9168161  T
Q  157 acttctccttattgatttttatgtttggttgctcctctcaattggttcttttgt 210  Q
    |||||| | |||||||| |||||| ||| | || ||||| | ||||||||||||    
T  9168160 acttctacctattgattcttatgtatggctacttctctctactggttcttttgt 9168107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 15629731 - 15629681
Alignment:
Q  272 gatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 322  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||| ||||||    
T  15629731 gatggttctctctttgattggttgatgatgatggttcttgctgctctctct 15629681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 9168117 - 9168053
Alignment:
Q  258 ggttcttatgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 322  Q
    ||||||| ||||| |||| || ||||||||| ||||| |||||||||||||||| ||| ||||||    
T  9168117 ggttcttttgtttggatgattttctctttgactggttaatggtgatggttcttgatgctctctct 9168053  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 2071914 - 2071866
Alignment:
Q  266 tgtttagatggtt-ctctctttgagtggttgatggtgatggttcttgtt 313  Q
    ||||||||||||| |||||||||  ||||| ||||||||||||||||||    
T  2071914 tgtttagatggttgctctctttggatggttaatggtgatggttcttgtt 2071866  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 2075444 - 2075396
Alignment:
Q  266 tgtttagatggtt-ctctctttgagtggttgatggtgatggttcttgtt 313  Q
    ||||||||||||| |||||||||  ||||| ||||||||||||||||||    
T  2075444 tgtttagatggttgctctctttggatggttaatggtgatggttcttgtt 2075396  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 3774687 - 3774635
Alignment:
Q  277 ttctctctttgagtggttgatggtgatggttcttgttgccctctctttgatga 329  Q
    |||||||||||  ||||| ||||| |||||||||||||| |||||| ||||||    
T  3774687 ttctctctttggctggttaatggttatggttcttgttgcactctctatgatga 3774635  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 42530806 - 42530868
Alignment:
Q  53 ttctcctcttttaattcttctgattgatttcacttctt-cccttttgattctttagattgatt 114  Q
    |||||| ||||| |||||||||||||||| |||||||| ||||||||||||||  ||||||||    
T  42530806 ttctccccttttgattcttctgattgattgcacttcttccccttttgattcttctgattgatt 42530868  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 50296009 - 50296065
Alignment:
Q  266 tgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 322  Q
    ||||| ||||||||||||||||| ||||||||| |||||||| ||| ||| ||||||    
T  50296009 tgtttggatggttctctctttgattggttgatgatgatggtttttgctgctctctct 50296065  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 46691827 - 46691771
Alignment:
Q  266 tgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 322  Q
    ||||| ||||||||||| ||||| ||||||||| |||||||| ||| ||| ||||||    
T  46691827 tgtttggatggttctctatttgattggttgatgttgatggttattgctgctctctct 46691771  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 7259292 - 7259241
Alignment:
Q  197 attggttcttttgtatggctgtttctctctatcggttcttttgtttggtttgg 249  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| ||||||||    
T  7259292 attggttcttatgtatggttgtttctc-ctatcggttcttttgtctggtttgg 7259241  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 16871390 - 16871423
Alignment:
Q  278 tctctctttgagtggttgatggtgatggttcttg 311  Q
    ||||||||||| ||||||||||||||||||||||    
T  16871390 tctctctttgattggttgatggtgatggttcttg 16871423  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 314
Target Start/End: Complemental strand, 9291016 - 9290978
Alignment:
Q  276 gttctctctttgagtggttgatggtgatggttcttgttg 314  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  9291016 gttctctctttgattggttgatgatgatggttcttgttg 9290978  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 18984209 - 18984262
Alignment:
Q  191 ctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttgg 244  Q
    ||||| |||||||||| |||||||||  || |||||| ||||||||||||||||    
T  18984209 ctctctattggttcttgtgtatggctagttatctctaccggttcttttgtttgg 18984262  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 18984142 - 18984211
Alignment:
Q  93 cttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctc 163  Q
    ||||||||||||  ||||||||  ||||||||||| ||||||||| || |||||||| | ||||||||||||    
T  18984142 cttttgattcttctgattgatt--gcacttctccccttatggatttttctgattgatagcattgcacttctc 18984211  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 18984248 - 18984312
Alignment:
Q  258 ggttcttatgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 322  Q
    ||||||| ||||| ||||||||||| ||||| |||||| ||||  ||||||||| ||| ||||||    
T  18984248 ggttcttttgtttggatggttctctatttgactggttggtggtagtggttcttgctgctctctct 18984312  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 14682 - 14629
Alignment:
Q  191 ctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttgg 244  Q
    ||||| |||||||||| |||||||||  || |||||| ||||||||||||||||    
T  14682 ctctctattggttcttatgtatggctagttatctctaccggttcttttgtttgg 14629  T

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Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 14749 - 14663
Alignment:
Q  93 cttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 180  Q
    ||||||||||||  ||||||||  ||||||||||| ||||||||| || |||||||| | ||||||||||||  ||||| || ||||||    
T  14749 cttttgattcttctgattgatt--gcacttctccccttatggatttttctgattgatagcattgcacttctctctattggttcttatgt 14663  T

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Target: scaffold0007; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 14643 - 14579
Alignment:
Q  258 ggttcttatgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 322  Q
    ||||||| ||||| ||||||||||| ||||| |||||| ||||  ||||||||| ||| ||||||    
T  14643 ggttcttttgtttggatggttctctatttgactggttggtggtagtggttcttgctgctctctct 14579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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