View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_26 (Length: 339)
Name: NF5312_high_26
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 29231786 - 29231919
Alignment:
| Q |
1 |
caattacaggcaatatattgttggtacatgttatggatgattattgtctaaaatctatttgaaatcagtctgaaaattacatttttctggcagtggcttc |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29231786 |
caattacaggcaatatattggaggtacatgttatggatgattattgtctaaaatctatttgaaatcagtctgaaaattacatttttctggcagtggcttc |
29231885 |
T |
|
| Q |
101 |
tttaatttacattttaccatttatctaaaaatta |
134 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
29231886 |
tttaatttacattttaccgtttatctaaaaatta |
29231919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 205 - 332
Target Start/End: Original strand, 29231995 - 29232124
Alignment:
| Q |
205 |
gccctgcataaaatttatgccaactcaatcaccgactata--taatatagctaggaataaattgatgtcacattgccctaagacctagatcaaatagtaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
29231995 |
gccctgcataaaatttatgccaactcaatcaccgactatatataatatagctaggaataaattgatgtcgcatttccctaagacctagatcaaatagtaa |
29232094 |
T |
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| Q |
303 |
tatcaaaattgttaggctgaatattcttcg |
332 |
Q |
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|||||||||||||| |||||||||| |||| |
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| T |
29232095 |
tatcaaaattgttaagctgaatatttttcg |
29232124 |
T |
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