View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_30 (Length: 325)
Name: NF5312_high_30
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 42243671 - 42243973
Alignment:
| Q |
17 |
aatatttcacatgtttaagcaactaacgaacacaacacattctaagcttcattttggattgcaacgcatcaaaattattaaggcttaattggattttgat |
116 |
Q |
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| T |
42243671 |
aatatttcacatgtttaagcaactaacgaacacaacacattctaagcttcattttggattgcaacgcatcaaaattattaaggcttaattggattttgat |
42243770 |
T |
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| Q |
117 |
ctatgtcttaaaacttatatagcctaactcaaaatctataaaaactggc-ttttaaggttagaacgactccgacttatatgaatatatattcaaacttaa |
215 |
Q |
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| T |
42243771 |
ctatgtcttaaaacttatatagcctaactcaaaatctataaaaactggctttttaaggttagaacgactccaacttatatgaatacatgttcaaacttaa |
42243870 |
T |
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| Q |
216 |
tctcatctaatgtgggattttcaacaacttacatataactaatgatgttcgattttatctcttagactttgattgtgcaaattaaatcttcaaagtatta |
315 |
Q |
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| T |
42243871 |
tctcatctaatgtgggattttcaacaacttacatataactaatgatgtttgattttatctcttagactttgattgagcaaattaaatcttcaaagtatta |
42243970 |
T |
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| Q |
316 |
tct |
318 |
Q |
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||| |
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| T |
42243971 |
tct |
42243973 |
T |
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