View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_33 (Length: 319)
Name: NF5312_high_33
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 36 - 308
Target Start/End: Original strand, 32136768 - 32137050
Alignment:
| Q |
36 |
tttgtatatctaacaaacatccacgtcgagcctcatttcttagcactaatcttgtattctcttaactaagta-------caattaatgaagctctcgttt |
128 |
Q |
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| T |
32136768 |
tttgtatatctaacaaacatccacgtcgggcctcatttcttagcactaatcttgtattctcttaactaagtagtaagtacaattaatgaagctatcgttt |
32136867 |
T |
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| Q |
129 |
tgtaagagtcaaataacgttaccatnnnnnnntaaagagtcaaacaacatggaagccccactacactagctatcacaatcacaattaacgatctttggcg |
228 |
Q |
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||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32136868 |
tgtaagagtcaaataacgttaccataaaaaaata--gagtcaaacaacgtggaagccccactacactagctatcacaatcacaattaacgatctttggcg |
32136965 |
T |
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| Q |
229 |
gcgcctattaaattttgattaaattttccactctat-----atgtttttaattttgtttcactaattattatatatttctttctt |
308 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32136966 |
gcgcctattaatttttgattaaattttccactctatatagcatgtttttgattttgtttcactaattattatatatttctttctt |
32137050 |
T |
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