View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_35 (Length: 315)
Name: NF5312_high_35
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 2337392 - 2337668
Alignment:
| Q |
19 |
aattaccacaatagttggattataattttagtagaccttgtccgttacactgaagttcttatgtctgataggcataactgtttaaaaagaaaaatttctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2337392 |
aattaccacaatagttggattataattttagtagaccttgtccgttacactgaagttcttatgtctgataggcataactgtttaaaaagaaaaatttctg |
2337491 |
T |
|
| Q |
119 |
atctttttccttgtatgtgctacatgttgtaatagttatcatatcattaactgacataagaatcctttctcacaattcatatattttgcagtgtaaatcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2337492 |
atctttttccttgtatgtgctacatgttgtaatagttatcatatcattaactgacataagaatcctttctcacaattcatatattttgcagtgtaaatcc |
2337591 |
T |
|
| Q |
219 |
atttagacttgtaggagttggattgtcggtgtggactcttgcgaccttcttttgcggtttttctttcaatttctggt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2337592 |
atttagacttgtaggagttggattgtcggtgtggactcttgcgaccttcttttgcggtttttctttcaatttctggt |
2337668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 163 - 295
Target Start/End: Original strand, 2344429 - 2344561
Alignment:
| Q |
163 |
cattaactgacataagaatcctttctcacaattcatatattttgcagtgtaaatccatttagacttgtaggagttggattgtcggtgtggactcttgcga |
262 |
Q |
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|||||| || |||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||| ||||| |||||||| | ||||| || || | |
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| T |
2344429 |
cattaaatgtcataagaatcctttctcacaattcatgtatttcgcagtgtcaatccatttaaacttataggatccggattgtcaatttggacactagcaa |
2344528 |
T |
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| Q |
263 |
ccttcttttgcggtttttctttcaatttctggt |
295 |
Q |
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||||||| || ||||||||||| |||||||||| |
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| T |
2344529 |
ccttcttctgtggtttttcttttaatttctggt |
2344561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 36798809 - 36798707
Alignment:
| Q |
193 |
attcatatattttgcagtgtaaatccatttagacttgtaggagttggattgtcggtgtggactcttgcgaccttcttttgcggtttttctttcaatttct |
292 |
Q |
| |
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|||| |||||||||||||||||| || ||||||||| | |||||||||||||| || |||||| |||| ||||| | || ||| ||||||||||||||| |
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| T |
36798809 |
attcctatattttgcagtgtaaacccctttagacttattggagttggattgtcagtttggactgttgcaaccttatgctgtggtctttctttcaatttct |
36798710 |
T |
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| Q |
293 |
ggt |
295 |
Q |
| |
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||| |
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|
| T |
36798709 |
ggt |
36798707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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