View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5312_high_37 (Length: 312)

Name: NF5312_high_37
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5312_high_37
NF5312_high_37
[»] chr5 (4 HSPs)
chr5 (21-236)||(11334917-11335132)
chr5 (231-303)||(11320739-11320811)
chr5 (239-295)||(24137326-24137382)
chr5 (64-137)||(11335312-11335384)
[»] chr7 (8 HSPs)
chr7 (170-284)||(26403200-26403314)
chr7 (181-295)||(3889163-3889279)
chr7 (64-153)||(44338660-44338748)
chr7 (170-248)||(10236744-10236822)
chr7 (106-168)||(26403166-26403228)
chr7 (251-293)||(46963394-46963436)
chr7 (181-295)||(3889420-3889536)
chr7 (154-295)||(3901887-3902028)
[»] chr8 (3 HSPs)
chr8 (164-227)||(32041645-32041708)
chr8 (64-153)||(20242337-20242425)
chr8 (64-153)||(20250735-20250823)
[»] chr1 (6 HSPs)
chr1 (33-183)||(9168107-9168258)
chr1 (245-295)||(15629681-15629731)
chr1 (231-295)||(9168053-9168117)
chr1 (239-286)||(2071866-2071914)
chr1 (239-286)||(2075396-2075444)
chr1 (250-302)||(3774635-3774687)
[»] chr2 (7 HSPs)
chr2 (64-159)||(29409336-29409429)
chr2 (231-295)||(32290876-32290940)
chr2 (153-213)||(1173120-1173178)
chr2 (33-143)||(38583910-38584020)
chr2 (16-87)||(38583931-38584003)
chr2 (251-293)||(8986666-8986708)
chr2 (239-280)||(9047984-9048025)
[»] chr3 (3 HSPs)
chr3 (26-87)||(42530806-42530868)
chr3 (239-295)||(50296009-50296065)
chr3 (239-295)||(46691771-46691827)
[»] chr4 (2 HSPs)
chr4 (170-222)||(7259241-7259292)
chr4 (251-284)||(16871390-16871423)
[»] chr6 (4 HSPs)
chr6 (249-287)||(9290978-9291016)
chr6 (164-217)||(18984209-18984262)
chr6 (66-136)||(18984142-18984211)
chr6 (231-295)||(18984248-18984312)
[»] scaffold0007 (3 HSPs)
scaffold0007 (164-217)||(14629-14682)
scaffold0007 (66-153)||(14663-14749)
scaffold0007 (231-295)||(14579-14643)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 11335132 - 11334917
Alignment:
Q  21 tgcatttctcctcttttaattcttctgattgatttcacttcttcccttttgattctttagattgattttgcacttctcccttatggattcttatgattga 120  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11335132 tgcacttctcctcttttaattcttcagattgatttcacttcttcccttttgattctttagattgattttgcacttctcccttatggattcttttgattga 11335033  T
Q  121 ttgaattgcacttctccttattgatttttatgtttggttgctcctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttggttt 220  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11335032 ttgaattgcacttctccttattgatttttctgtttggttgctcctctctattggttcttttgtatggttgtttctctctatcggttcttttgtttggttt 11334933  T
Q  221 ggtttgattgggttct 236  Q
    ||||||||||||||||    
T  11334932 ggtttgattgggttct 11334917  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 11320811 - 11320739
Alignment:
Q  231 ggttcttatgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctctttgatgat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11320811 ggttcttatgtttagatggttctctctttgagtggttgatggtgatggtgcttgttgccctctctttgatgat 11320739  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 24137326 - 24137382
Alignment:
Q  239 tgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 295  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||| ||| ||||||    
T  24137326 tgtttggatggttctctatttgattggttgatggtgatggttcttgctgctctctct 24137382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 11335384 - 11335312
Alignment:
Q  64 cccttttgattctttagattgattttgcacttctccct-tatggattcttatgattgattgaattgcacttctcc 137  Q
    ||||||||||||||| ||||||||   ||||||||||  ||| ||||||| |||||||||| |||||||||||||    
T  11335384 cccttttgattcttttgattgatta--cacttctccccctattgattcttctgattgattgcattgcacttctcc 11335312  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 170 - 284
Target Start/End: Original strand, 26403200 - 26403314
Alignment:
Q  170 attggttcttttgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgggttcttatgtttagatggttctctctttgagtggttga 269  Q
    |||| |||||||||||||||| ||||||| | |  ||||||||||||||||||||||| | ||||||| ||||||||||||||||| ||| | |||||||    
T  26403200 attgattcttttgtatggctgcttctctccaccaattcttttgtttggtttggtttgacttggttcttctgtttagatggttctctatttaactggttga 26403299  T
Q  270 tggtgatggttcttg 284  Q
    |||| ||| ||||||    
T  26403300 tggtaatgattcttg 26403314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 3889163 - 3889279
Alignment:
Q  181 tgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgg-----gttcttatgtttagatggttctctctttgagtggttgatggtga 275  Q
    ||||||| || ||||| ||| ||||||||||||||||||||||||| ||||     |||||||||||| |||||||   ||||||  ||||||||| |||    
T  3889163 tgtatggttgcttctccctaccggttcttttgtttggtttggtttggttggacttagttcttatgtttggatggtt---tctttggttggttgatgttga 3889259  T
Q  276 tggttcttgttgccctctct 295  Q
    |  |||||||||| ||||||    
T  3889260 ttattcttgttgctctctct 3889279  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 44338660 - 44338748
Alignment:
Q  64 cccttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 153  Q
    ||||||||||||||| ||||||||  |||||| |||| |||||||||||| |||||||  | ||||||||||||  ||||| |||||||||    
T  44338660 cccttttgattcttttgattgatt--gcacttatccccttatggattcttctgattgagagcattgcacttctctctattggtttttatgt 44338748  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 10236744 - 10236822
Alignment:
Q  170 attggttcttttgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgggttcttatgtttagatg 248  Q
    |||||||||| | ||||| || ||||| ||| |||||||||||||||| || |||||| | ||||||| ||||| ||||    
T  10236744 attggttcttctatatggttgcttctccctagcggttcttttgtttggatttgtttgacttggttcttttgtttggatg 10236822  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 26403166 - 26403228
Alignment:
Q  106 gattcttatgattgattgaattgcacttctccttattgatttttatgtttggttgctcctctc 168  Q
    ||||||| |||||||||| ||||||||||||| |||||||| || ||| ||| |||| |||||    
T  26403166 gattcttttgattgattgcattgcacttctccctattgattcttttgtatggctgcttctctc 26403228  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 46963436 - 46963394
Alignment:
Q  251 tctctctttgagtggttgatggtgatggttcttgttgccctct 293  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||    
T  46963436 tctctctttgattggttgatggtgatggttcttgctgctctct 46963394  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 3889420 - 3889536
Alignment:
Q  181 tgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgg-----gttcttatgtttagatggttctctctttgagtggttgatggtga 275  Q
    ||||||| || ||||| ||| ||||||||||||||| ||||||||  || |     |||||||||||| |||||||   ||||||  |||||||||||||    
T  3889420 tgtatggttgcttctccctaccggttcttttgtttgatttggtttcgtttgacttagttcttatgtttggatggtt---tctttggttggttgatggtga 3889516  T
Q  276 tggttcttgttgccctctct 295  Q
    |  |||||||||| ||||||    
T  3889517 ttattcttgttgctctctct 3889536  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 295
Target Start/End: Original strand, 3901887 - 3902028
Alignment:
Q  154 ttggttgctcctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttggttt-----ggtttgattgggttcttatgtttagatg 248  Q
    |||||||||||||||| |  |||| | ||||||| || ||||| ||| |||||||||||| ||||||     ||||||| |  |||||||||||| ||||    
T  3901887 ttggttgctcctctcatt--gttcgtatgtatggttgcttctccctaccggttcttttgtatggtttagtttggtttgacttagttcttatgtttggatg 3901984  T
Q  249 gttctctctttgagtggttgatggtgatggttcttgttgccctctct 295  Q
    |||   ||||||  ||||||||||| ||  |||||||||| ||||||    
T  3901985 gtt---tctttggttggttgatggttattattcttgttgctctctct 3902028  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 32041645 - 32041708
Alignment:
Q  164 ctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttggtttggtttga 227  Q
    ||||| ||| |||||||||||||| || ||||||||| ||||||||||||||||||| ||||||    
T  32041645 ctctctatttgttcttttgtatggttgattctctctaccggttcttttgtttggtttagtttga 32041708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 20242337 - 20242425
Alignment:
Q  64 cccttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 153  Q
    ||||||||||||||| ||||||||  |||||| |||| |||||||||||| |||||||  | ||||||||||||  ||||| |||||||||    
T  20242337 cccttttgattcttttgattgatt--gcacttatccccttatggattcttctgattgagagcattgcacttctctctattggtttttatgt 20242425  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 20250823 - 20250735
Alignment:
Q  64 cccttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 153  Q
    ||||||||||||||| ||||||||  |||||| |||| |||||||||||| |||||||  | ||||||||||||  ||||| |||||||||    
T  20250823 cccttttgattcttttgattgatt--gcacttatccccttatggattcttctgattgagagcattgcacttctctctattggtttttatgt 20250735  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 183
Target Start/End: Complemental strand, 9168258 - 9168107
Alignment:
Q  33 cttttaattcttctgattg-atttcacttcttc-ccttttgattctttagattgattttgcacttctccctt-atggattcttatgattgattgaattgc 129  Q
    ||||| |||||||| |||| ||| ||||||| | |||||||||||||  ||| ||||  ||||||||||||| |||||||||| | |||||| | |||||    
T  9168258 cttttcattcttcttattgcattgcacttctcctccttttgattcttctgatcgatt--gcacttctccctttatggattcttctaattgatagcattgc 9168161  T
Q  130 acttctccttattgatttttatgtttggttgctcctctcaattggttcttttgt 183  Q
    |||||| | |||||||| |||||| ||| | || ||||| | ||||||||||||    
T  9168160 acttctacctattgattcttatgtatggctacttctctctactggttcttttgt 9168107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 15629731 - 15629681
Alignment:
Q  245 gatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 295  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||| ||||||    
T  15629731 gatggttctctctttgattggttgatgatgatggttcttgctgctctctct 15629681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 9168117 - 9168053
Alignment:
Q  231 ggttcttatgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 295  Q
    ||||||| ||||| |||| || ||||||||| ||||| |||||||||||||||| ||| ||||||    
T  9168117 ggttcttttgtttggatgattttctctttgactggttaatggtgatggttcttgatgctctctct 9168053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 2071914 - 2071866
Alignment:
Q  239 tgtttagatggtt-ctctctttgagtggttgatggtgatggttcttgtt 286  Q
    ||||||||||||| |||||||||  ||||| ||||||||||||||||||    
T  2071914 tgtttagatggttgctctctttggatggttaatggtgatggttcttgtt 2071866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 2075444 - 2075396
Alignment:
Q  239 tgtttagatggtt-ctctctttgagtggttgatggtgatggttcttgtt 286  Q
    ||||||||||||| |||||||||  ||||| ||||||||||||||||||    
T  2075444 tgtttagatggttgctctctttggatggttaatggtgatggttcttgtt 2075396  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 3774687 - 3774635
Alignment:
Q  250 ttctctctttgagtggttgatggtgatggttcttgttgccctctctttgatga 302  Q
    |||||||||||  ||||| ||||| |||||||||||||| |||||| ||||||    
T  3774687 ttctctctttggctggttaatggttatggttcttgttgcactctctatgatga 3774635  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 159
Target Start/End: Complemental strand, 29409429 - 29409336
Alignment:
Q  64 cccttttgattctttagattgattttgcacttctcccttatggattcttatgattgattgaattgcacttctccttattgatttttatgtttggtt 159  Q
    |||| |||||||||  ||||||||  |||| |||||| | | ||||||| |||||||||| ||||||||||||| |||||||| || |||||||||    
T  29409429 ccctattgattcttctgattgatt--gcacgtctcccctgttgattcttctgattgattgcattgcacttctccctattgattcttctgtttggtt 29409336  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 32290876 - 32290940
Alignment:
Q  231 ggttcttatgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 295  Q
    ||||||| ||||| ||||||||||||||||| ||||||||| ||||| |||||| ||| ||||||    
T  32290876 ggttcttttgtttggatggttctctctttgattggttgatgatgatgattcttgctgctctctct 32290940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 1173178 - 1173120
Alignment:
Q  153 tttggttgctcctctcaattggttcttttgtatggctgtttctctctatcggttcttttgt 213  Q
    |||||||||||||||  ||||||||||||||||| ||| ||||||||| | ||||||||||    
T  1173178 tttggttgctcctct--attggttcttttgtatgactgcttctctctacctgttcttttgt 1173120  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 38584020 - 38583910
Alignment:
Q  33 cttttaattcttctgattg-atttcacttctt-cccttttgattctttagattgattttgcacttctcccttatggattcttatgattgattgaattgca 130  Q
    ||||| ||||||||||||| ||| || ||||  ||||||||||||||  ||||||||  |||||||||||   | ||||||| |||||||||| ||||||    
T  38584020 cttttgattcttctgattgcattgcatttctcgcccttttgattcttctgattgatt--gcacttctccccctttgattcttctgattgattgtattgca 38583923  T
Q  131 cttctccttattg 143  Q
    |||||| ||||||    
T  38583922 cttctctttattg 38583910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 38584003 - 38583931
Alignment:
Q  16 tgcaatgcatttctc-ctcttttaattcttctgattgatttcacttcttcccttttgattctttagattgatt 87  Q
    |||| |||||||||| | ||||| |||||||||||||||| ||||||| ||| ||||||||||  ||||||||    
T  38584003 tgcattgcatttctcgcccttttgattcttctgattgattgcacttctccccctttgattcttctgattgatt 38583931  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 8986666 - 8986708
Alignment:
Q  251 tctctctttgagtggttgatggtgatggttcttgttgccctct 293  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||    
T  8986666 tctctctttgattggttgatggtgatggttcttgctgctctct 8986708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 9048025 - 9047984
Alignment:
Q  239 tgtttagatggttctctctttgagtggttgatggtgatggtt 280  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||    
T  9048025 tgtttggatggttctctttttgattggttgatggtgatggtt 9047984  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 42530806 - 42530868
Alignment:
Q  26 ttctcctcttttaattcttctgattgatttcacttctt-cccttttgattctttagattgatt 87  Q
    |||||| ||||| |||||||||||||||| |||||||| ||||||||||||||  ||||||||    
T  42530806 ttctccccttttgattcttctgattgattgcacttcttccccttttgattcttctgattgatt 42530868  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 50296009 - 50296065
Alignment:
Q  239 tgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 295  Q
    ||||| ||||||||||||||||| ||||||||| |||||||| ||| ||| ||||||    
T  50296009 tgtttggatggttctctctttgattggttgatgatgatggtttttgctgctctctct 50296065  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 46691827 - 46691771
Alignment:
Q  239 tgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 295  Q
    ||||| ||||||||||| ||||| ||||||||| |||||||| ||| ||| ||||||    
T  46691827 tgtttggatggttctctatttgattggttgatgttgatggttattgctgctctctct 46691771  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 7259292 - 7259241
Alignment:
Q  170 attggttcttttgtatggctgtttctctctatcggttcttttgtttggtttgg 222  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| ||||||||    
T  7259292 attggttcttatgtatggttgtttctc-ctatcggttcttttgtctggtttgg 7259241  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 16871390 - 16871423
Alignment:
Q  251 tctctctttgagtggttgatggtgatggttcttg 284  Q
    ||||||||||| ||||||||||||||||||||||    
T  16871390 tctctctttgattggttgatggtgatggttcttg 16871423  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 9291016 - 9290978
Alignment:
Q  249 gttctctctttgagtggttgatggtgatggttcttgttg 287  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  9291016 gttctctctttgattggttgatgatgatggttcttgttg 9290978  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 18984209 - 18984262
Alignment:
Q  164 ctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttgg 217  Q
    ||||| |||||||||| |||||||||  || |||||| ||||||||||||||||    
T  18984209 ctctctattggttcttgtgtatggctagttatctctaccggttcttttgtttgg 18984262  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 18984142 - 18984211
Alignment:
Q  66 cttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctc 136  Q
    ||||||||||||  ||||||||  ||||||||||| ||||||||| || |||||||| | ||||||||||||    
T  18984142 cttttgattcttctgattgatt--gcacttctccccttatggatttttctgattgatagcattgcacttctc 18984211  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 18984248 - 18984312
Alignment:
Q  231 ggttcttatgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 295  Q
    ||||||| ||||| ||||||||||| ||||| |||||| ||||  ||||||||| ||| ||||||    
T  18984248 ggttcttttgtttggatggttctctatttgactggttggtggtagtggttcttgctgctctctct 18984312  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 14682 - 14629
Alignment:
Q  164 ctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttgg 217  Q
    ||||| |||||||||| |||||||||  || |||||| ||||||||||||||||    
T  14682 ctctctattggttcttatgtatggctagttatctctaccggttcttttgtttgg 14629  T

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Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 14749 - 14663
Alignment:
Q  66 cttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 153  Q
    ||||||||||||  ||||||||  ||||||||||| ||||||||| || |||||||| | ||||||||||||  ||||| || ||||||    
T  14749 cttttgattcttctgattgatt--gcacttctccccttatggatttttctgattgatagcattgcacttctctctattggttcttatgt 14663  T

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Target: scaffold0007; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 14643 - 14579
Alignment:
Q  231 ggttcttatgtttagatggttctctctttgagtggttgatggtgatggttcttgttgccctctct 295  Q
    ||||||| ||||| ||||||||||| ||||| |||||| ||||  ||||||||| ||| ||||||    
T  14643 ggttcttttgtttggatggttctctatttgactggttggtggtagtggttcttgctgctctctct 14579  T

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