View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5312_high_38 (Length: 311)

Name: NF5312_high_38
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5312_high_38
NF5312_high_38
[»] chr2 (1 HSPs)
chr2 (1-291)||(11789557-11789846)


Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 11789557 - 11789846
Alignment:
Q  1 atacacagtcaaagataatactccattcatttcatggctttctagtggggacaaattggtaggtcctcatctcaacgtcactcactcataggtacatttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11789557 atacacagtcaaagataatactccattcatttcatggctttctagtggggacaaactggtaggtcctcatctcaacgtcactcactcataggtacatttg 11789656  T
Q  101 ttacgcaagtttaatggcaagcattacttttgtaatacttgtttgctaagcagaaatatccttcgcccaacttatagattgtgtagaagtgtggtttaat 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11789657 ttacgcaagtttaatggcaagcattaattttgtaatacttgtttgttaagcagaaatatccctcgcccaacttatagattgtgtagaagtgtggtttaat 11789756  T
Q  201 taagttgtaggcacaaattctatggtctagtatgcgctaaacataaaatgcatggaaaactaaaagggggaaagaagaacaatcttatgct 291  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||| |||||||||||||||||||||||||    
T  11789757 taagctgtaggcacaaattctatggtctagtatgtgctaaacataaagtgtatggaaaactaaaa-ggggaaagaagaacaatcttatgct 11789846  T

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